LOCUS AK064839 2813 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000F24, full insert
sequence.
ACCESSION AK064839
VERSION AK064839.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2813)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2813
/clone="J013000F24"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1342..1794
/db_xref="Osa1:LOC_Os10g11260"
/db_xref="RAP-DB:Os10g0190000"
/note="(RAP Annotation release2) Similar to
Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19)
(Ubiquitin-protein ligase M) (Ubiquitin carrier protein
M) (Nedd8-conjugating enzyme Ubc12)"
/note="(Rice Genome Annotation Project) NEDD8-conjugating
enzyme Ubc12-like, putative, expressed"
/note="mapping to R10-TIGRv4S1-000141F (Chr.10: short
arm=6009720, long arm=6015999, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89234.1"
/translation="MREYISELNLPKSTSISFPNGKDDLMNFEIIVRPDEGYYLGGTF
VFTFQVSPSYPHEPPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLNL
LFTQPNDEDPLNHEAAAVLRDNPKLFEANVKRAMAGGYVGQHYFPRCA"
BASE COUNT 760 a 554 c 612 g 887 t
ORIGIN
1 gcctagttcc ttcccttgcg taatagaaag agagatctcc cgtctcgtcc gtcgtctcct
61 ccgctccttg cgccaagacg agtcgcggct caacagagga ggggcgccga tctccatctg
121 gcgagcagag caggggaggg gaagggaagg tatcctgaaa gatgcttaat cttatcaaaa
181 taaaggataa aaagaaagag caggcagcaa gtgctgctgg aaaggctcct gtgaagaagc
241 aatctgctgg agagctccgt cttcacaaag gtgcattgag ttatagatga ctgtcagcac
301 ttccttttgg tcataaaaac atgttgtctg gacattgaca gagccttcac agtgcaatct
361 ttatctctaa tttattttgt aatgtaattt aaaatacgat aaattacaat attatgaaga
421 taattttgat actaatctac aattctgtat atatatgatt attatgtatc tgatattaat
481 atttattttt tttgttattt taactagatg tgtgtctaaa atgaatgtgt tcttgtgacc
541 aaagtaatta cctttgttga gttctcttac aaaaatttgt gagctagaca tacaattcct
601 tgaattttaa acttttaact aactctcaaa gcttatcaaa ctgttctcat aaatgtaatg
661 tttccactat cctcacaggt ggtttttatt tgaataattt gatgctggca tgctgctgca
721 tatgtggcta tgctcttttt taagttgtta gcaatctctt tattttcatg ttgagcatga
781 ctagtagtat atgcgtcatg tggggcagtc ctgccggctg ccggtgtcac caaaggggac
841 ctgatagtgc tccagcacac atgccagatg tggaacagta gctctctcat cttctctttc
901 cttcatttct ctccttattt cctctctttc ttgaatcctg atctagagga gatggagcag
961 cgagggtagg agcagcactg ggttaatcag taggagaagt gacaaagaag atgatagcag
1021 ggatgtcaat taatacttac agttgctatt cctcatcgtg tgaaaggaaa ttaaagtgac
1081 aggtggatgg ctattccaat catccaatgc agcgtatatt aatttgtggc actttaagct
1141 aggtgtatgg tatcttattt aagtaatgca ttccgtacac tggcatgctg tctagatgcc
1201 atggaatatg tgaaagcaac tcttctagcg attgtgcaaa tggccaaacc ttgaatttgt
1261 ggaccatcca agttggagtg ccttaaaaga ttttgcttga ggccaagagc tatatgcttg
1321 cacggactaa gccacaagtc catgcgtgaa tatattagtg agctaaacct acccaagagc
1381 acatcaattt cttttcccaa tggcaaggat gatctgatga attttgagat catcgtccga
1441 cctgatgaag gatattacct aggtggcact ttcgtcttta cttttcaagt ctctccctct
1501 tatcctcatg aacctccaaa ggtgaagtgc aagaccaagg tataccatcc aaatattgat
1561 ttggaaggaa atgtatgcct gaacattttg cgtgaagatt ggaagcctgt tctcaacatc
1621 aacactgtta tttatggcct taaccttctt tttacgcaac caaacgatga ggatccgttg
1681 aaccatgaag cagcagctgt cctccgtgac aacccaaagc tgtttgaagc taatgttaaa
1741 agggcaatgg ccggaggcta tgtgggtcaa cactatttcc caagatgtgc atgatatggt
1801 gctgggtgcc acaaacatta gtaagttaag ccacctgggc ctcttcccga cattctggat
1861 tgtatggttt cggtgcgtta aagtgctgtc ggatggatgt gatatgttga ctgtatgacg
1921 gcgatgctgc catctgtgtg atatttgttt aaagtcagta aattggtaat ctggtggtgg
1981 tacagataaa atttgagttg cagttcaagc tggatttata catcattttc ttttgtgcag
2041 tttgcttcag tcagaacctg atatccatct ttgctcgtag atagtgctgt gtatgttttc
2101 cttcctgtat ggctgtatga ggcttgaatt cggtccaact atcagattgt agtttacgac
2161 ttgtctacat aactctcaaa atctccaatc gacttgtcta cataacacac aaggcacatg
2221 tttataggag gatcagagat taagggttat taataagagc accattcgaa aatttcattt
2281 ttttttgtca ctataggtga ataccagtct tttgacatcc cacgaaaaat ttggatcata
2341 aggattgagt tacaaaggca aaggcgaatc ttctgcaaaa gttaaacgtg ctgaagtcca
2401 caagtcttgt gtggcaaggg gaatcgcgta aattcacgtt cgagggacgt ggttcgttgc
2461 gtcgccgtcg cttcctcatc cgacggcgca atttcctgtg tgcgcgcgtt gtttgttggg
2521 ggtggccggg tggggtataa catctcaccg tgatcgcctc cgttgccgac tacagcccgc
2581 agctgcttaa agtaactggg ccgaaccgaa ccgttggaca tctcgttttt tatttggtat
2641 ttttattctc ttcagcctat gttagctaca tttttattga gaattgagcc aattattttg
2701 taataagtag ttattatagc tctttaaagc aaaaaccgaa catgtatact attgactaaa
2761 taacaataac ggtggtgatg gttctgccac caatccacca ccacttcttt cac
//