LOCUS AK064817 2618 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013000E14, full insert
sequence.
ACCESSION AK064817
VERSION AK064817.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2618)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2618
/clone="J013000E14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1819..2250
/db_xref="Osa1:LOC_Os01g48190"
/note="(Rice Genome Annotation Project) fiber protein
Fb2, putative, expressed"
/note="mapping to R01-TIGRv4S1-001155F (Chr.1: short
arm=27928352, long arm=27931760, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89220.1"
/translation="MLNHITMQHGYLFKSGRRMRRFDIPESQALSLLSRDLRDAQLQA
LLGGGHRQRRSNTTATNISADPLLSSFGLGFSTLDSEERSKAPVPIPDDTSIHKDTPA
QPWESRIDSSLTSEEREQKRKQATDRATFVQGLVLSTLFED"
BASE COUNT 663 a 575 c 635 g 745 t
ORIGIN
1 tcccacccgc tgctgcttcc tcgcctttcc gataagaagc ttcgccgtct cctcctcctc
61 tttcccttcc tccgccgctc catcaaaaaa tctccacaag gcttaagcag agggagggtg
121 agggattaga aacaaacaac ccttcggaga aaatcacgag aggcttcccg agggcaaagt
181 ctccgattca ttcaggtccg actcgatcgg cgatccgacg aagctcgagc aggtgaggga
241 gacggactcg gactcggagc acggaaccgg tatattaggg aggctgaaga gggagcttga
301 gagggggtct agccttaagc tcgaacgcgg ggtggtggtt gtaccagcag cagcagggaa
361 tcatggactc ggagcactgg atctcgagcc tcgccgccgc caagcggttc tacgcggcgc
421 agctcggtca cgtcgacgat atggcgggga ttggaatgga ggaggtggag atggagatgg
481 aggatgatgg cgagggcatg gagctggagc tggagatgca gctggaggag gcgacgtggc
541 cggacgtggc ctgcccctac tgctacgagg accacgacat cgcgtccctc tgcgcccacc
601 tcgaggagga ccacccctac gagccccaca cctcggtgag ctcctcgccg ccatgccctg
661 cgccgcaggg ctccttgctc tgacgctctg atgacatgac gcacaaagtc tggcaaagct
721 gctccttttg ttcgattagt aggaacgctg tagctttagg ggttgacttg gcgaatgaac
781 tcaatatttg ggctacttgt ggagttgcgg tagtagcaaa cttgcggggt atcttcttga
841 aatagccaaa attcttgaga tgatagtatt atgcaaagct cctctagcct tgagttcttg
901 cctctctatg gcttggcttg caatagtttg tgagcaaaga ggtagaatct ttggtatctg
961 tatagtatca gtcaactacg gagcataagc ttatggattc agaacttggc tgaaaacact
1021 agcgatttgg accgggaaat tgtgattttg tgattcgtag gtagggaagt tgtgttgtag
1081 ttttaagggc aaggataatt atatatttct tataagaact gtagattatg cttgactgaa
1141 ggttttaaat cagtagccag cattgttcac ttctgtagtt gactgctcta gcttgtagtt
1201 gtgtgttcta tttcaaggcc tacttctgta aacaaggtag ctaatttcct ttttatttga
1261 ttgccactat agtacttatg tcactgcgcc gactgtgcac cctactcttg gtggacagct
1321 gctcagttgt cataaactaa atgttcatga ataccatgac ttaaaaacgt aatcctctgt
1381 tattcatcta acttcagcaa caggagttga ttttgcaatg gcacaaaata acctagaaaa
1441 gttaatgatg gtaatgtgat ttagatttaa aagactcgaa ctgttgtgtg gggtccattt
1501 ttaagatttg gattcatttt attctagtga aacagaggtg tttgagaatg ccatatatat
1561 acttttaatg ttataatctc gtctgaagtt cgagatgtta actgcagaaa tcctagaatc
1621 tgaaataacc attgtgctta tttgaatctt tcgctaagtt tagtatcaaa taagcacatt
1681 gggttcaaag tatattaaat cagcacctta tgttcatata ttgtgcacat aaaatgtgca
1741 ttgtgttctt ctcctgattt atttgctttg ctttgctttc agccctgtcc catctgcttc
1801 gaaaagatta caagagatat gttaaatcat atcaccatgc aacatggtta cttgttcaag
1861 agtggtcgca ggatgcgcag attcgatatt cccgagagcc aggcactttc tttactgagc
1921 cgagatctgc gggatgctca gttacaggca cttctaggag gtggtcatcg tcagcgaaga
1981 agcaacacta ctgccacaaa catttctgct gatcctctgc tttcttcgtt tggcctgggc
2041 ttctcaacat tggattcaga ggaacgatca aaagcaccag ttcctattcc tgatgataca
2101 tcaattcata aggatactcc tgctcagcca tgggaatcaa ggatcgactc atcgctcacg
2161 agtgaggaaa gggaacaaaa gcggaaacaa gccactgaca gagcaacctt tgtgcaaggc
2221 ctggtgctct ccactttatt tgaagactga ctgttcaagt agccctagtt tttcttgcta
2281 gatgcatgtt tcctctcgct ggttcccata aaagcgcaat gttccacctg atttggtgaa
2341 tctgatttcg tcaacagtga gatggatgtg cttctggtgc cccgttgttc tttcgcttca
2401 gtaaagcgcg aagttgattt gggcatgata cacaccttaa tttatgtcag ctgccctgta
2461 ccattgcttt ttatgaatta acgggtagcc acaccttgac tgtaactcgt tgttgtacct
2521 ctccatactg tctaggaaca ttggtttgta caaacataaa agctgttaca tgttgtacaa
2581 tgcaaaggca aatgcagaag caccgtttat atcgaatc
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