LOCUS AK064730 1982 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-120-A12, full insert
sequence.
ACCESSION AK064730
VERSION AK064730.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1982)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1982
/clone="002-120-A12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1982
/db_xref="Osa1:LOC_Os05g51020"
/db_xref="RAP-DB:Os05g0587700"
/note="(RAP Annotation release2) Protein of unknown
function DUF231, plant domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R05-TIGRv4S1-001140R (Chr.5: short
arm=29201324, long arm=29203580, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 398 a 584 c 574 g 426 t
ORIGIN
1 gcacatccat cccagtgaaa agtgcagtgg cagaggcaga gcagccggtg aagtagcagt
61 tggagctaag ctagcaatgg atcccctgaa gctgaaacca ccctccatgg ccacccgcaa
121 gcgcctcgcc ggcgccgccc tcagctgcct ctcgctcttc ctcctctccc gcgccctcct
181 cttctcccaa gacgacccgg agcccgtcaa gcgaccggac gaggcgtcct caatctcatt
241 gccgcccgac cgcattgcca ttattgctgc tgcacctgcg ccgagcccag ctactgctgc
301 tgcttccgat ggctcgccgg cgccggccca ggatgaagtc cggtgcgacc tgttcgacgg
361 cagctgggtg tacgacccgg ccggctatcc gctctacgac gccggggagt gccccttctt
421 gagcgaccag gtcacctgct ggaggaacgg ccggccggac tccggctacg agcactggcg
481 gtggcagccc aggcggtgcg ccgccgctct caggtgcgtg gccactgcta cctaccttgc
541 atctcttctg cctttttgaa atttctcttc attttgtttt aaatcctgga cagacaaact
601 aaagctggtc tctttagtag attctgaatc tgatttgttt ttgaaatgcg catgaatcgt
661 tcatgaatgc tctccgttgt gtgtgtgtat cccctgtgac acagtcgtaa tcgatggcta
721 aaatgaacaa gcccgtgcaa gtcgcactgt ctcagggccc gttcttggat acaaaaggta
781 aatgaaaagt gggtaaagtt gtcaacttgt gacgatgtgc gttgcttttg agttgggaac
841 acagctctga cagtgccctg tgcatagtac tactagtgtt atggcagtaa ttaattattt
901 ttcactttga aacacatagt tgacactagt tgcacacatg acaaccaacc acggtcactg
961 ttcctgattc ctccggtgca tcattccgac cggaataatc gtgttgattc tccatgagta
1021 atcctctgca aatcgcacac gtcgcactga ataatgcttc acttttttat caggctgcgt
1081 ggtggggaga tgctggagca gtgccgggac aagcgagtgg tgctcgtcgg cgactcgctc
1141 aaccgcaaca tgtgggagtc gctcgcctgc gtcctctacg ccgcggcgcc cgaccgctca
1201 cgcgccaccg tcgacgacgc cagcgccgac cacaagatct tccaagcatt ggattacaac
1261 tgcacggtgg agttctactg gagcccgttc ctggtggacc tcgacgacca gaccagggtg
1321 ctgaagctgg accgcctccc ggcgacgacg tatcgccggc tcgccgccgc cgacgtgctg
1381 gtgttcaaca cgggccactg gtggacgcac accggcaagt tcagggcgtg ggatcacctg
1441 gagaggaacg ggaagaaggt ggagatggga gcggaggaag ccttcaaccg cgcgctccgg
1501 acatggacgc ggtggctcga tcgaaacgtg gactctcaca agaccatggt gttcttccgc
1561 agcatctccc ccgagcacaa gaacaagaac tggtgctaca acgagacggc tccgatggcg
1621 agggcggagg agtacgtgga ggcgttcccg agagggatgg tgtcgatcgt ggagaggaac
1681 gtgaggaggg cgaggacggc ggtggggtac ctggacatca cccggctgtc ggagctccgg
1741 cgagacgcgc acccgtcagt gttcacggtc aggggaggga agctgctgac gccggagcag
1801 aggcggcagc cgggatcgta cgccgactgc agccactggt gcctgcccgg gctgcctgac
1861 acgtggaacc ttctcctctt tgcctcctgg acctcgcttc gatcctgaga tcatctcttc
1921 ttctccattg tcgatgcgcc attgatgcat catgcatgta tatataggat taattgttgc
1981 tg
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