LOCUS AK064575 2280 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-112-E05, full insert
sequence.
ACCESSION AK064575
VERSION AK064575.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2280)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2280
/clone="002-112-E05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2280
/db_xref="Osa1:LOC_Os02g34850"
/db_xref="RAP-DB:Os02g0554000"
/note="(RAP Annotation release2) Zinc finger, CW-type
domain containing protein"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-4 and H3 lysine-36specific
ASHH2, expressed"
/note="mapping to R02-TIGRv4S1-000829F (Chr.2: short
arm=20894322, long arm=20901308, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 695 a 444 c 528 g 613 t
ORIGIN
1 agtcatggag gaaagaaggg taaggtgcgg gatccacatg ggaagggcag aagcaagaag
61 aaaaatatag ctgataacac ctacggtttg ccggctcagt taactgacct gtcagaacct
121 cgcatgaata aacagagtga tcttattcct gctgctgaac ttgtattcaa gaactcttct
181 gccgtatctg ttgaattacc tgcagttgtt gcttgcaaaa ctgatggtgc atctgtacca
241 ccagcacctg cttgggtttg ttgtgatgat tgcgaaaaat ggcgctgcat accaactgaa
301 ctggcagata aaatctcaaa agaaaatctc agatggactt gtaaggaaaa cgaagataag
361 acatttgcca attgctctat accacaagag aagacagatg atgagatcaa tgcagagctt
421 gggctttcag atgcttctgc tgatgaagct aatggcgatg gatcaaactc gaaagcttct
481 ggagaaccaa actttgcact tctcaggtca aacttgtttc tacatcgtaa ccgcaggaca
541 caatccattg atgagagcat ggtatgcaat tgtaagccgc ctcacgatga ccgaatgggt
601 tgtagagatg gttgcttgaa caggatactc aacattgaat gcaccaaacg tacatgtcca
661 tgtggggagc actgttccaa tcagcagttc caaaggcgca cctatgcaaa acttggtaag
721 ttccatactg gtaaaaaggg ctatggattg caattgaagg aagatgtatc tgaaggacga
781 ttcctcattg aatatgttgg agaggtcctt gatataacgg cttatgaatc ccgccaaagg
841 tattatgcct ctaaaggcca gaagcatttc tatttcatgg cacttaatgg tggtgaggtg
901 atagatgctt gtactaaagg aaacttgggc cggttcatca atcatagctg cagtcctaat
961 tgccgtacag agaagtggat ggtcaatggt gaagtctgca ttggaatatt tgctatgagg
1021 aacatcaaga agggtgaaga attgacgttt gattacaact atgttcgtgt atctggtgct
1081 gctcctcaga aatgcttttg cggtactgcc aaatgccggg gttacatcgg tggtgacata
1141 tcaggtgctg atatgattac tcaagatgat gctgaagcag ggactttcga acctatggct
1201 gttcaggagg atgctgagga agtacttggt gcaaatggtt tgtcctctca tggcacacat
1261 ctagatattg tcgaccatga agcttcctct aaaacagaag attcaaatga ttgcccatct
1321 gtgaacccac cagagttaga atctgagcaa caaacttcag gaaccttatt tgacacaagt
1381 gagccagaaa attccttaga agcattgagc ccacaggatg atgaagatgt cgtccgcaca
1441 cctgtccatg tgtcccggac agttgagagt acgtcgcggc agtttccagg atatggtact
1501 cggtcatcag aaattttgca aagggctcca tgcacactgg atggaccaaa ggttccaagc
1561 acgacaaatg gaattccgcc tagttccgat ttggggagcc actgggtacc aggtttccac
1621 gctaataaga aaaccaatgt aaaacatcat ttgattctga atccatcatc agctcctatt
1681 gacagtgagc acattttggg agttgaagga agattgaaca gcttgcttga tgtaaatgga
1741 ggtattagca aacgaaaaga cgcaacaaat ggatacttga agcttctcct tgtggctgca
1801 gcggaaggtg acaatgctgg gggcacgtct aaaagtgtaa gggatctttc gttaattctt
1861 gatgcacttc tgaaaacaag atccaattct gtcctgttgg atatcatcaa taagaatgga
1921 ctgcaaatgc ttcacaatat attaaagcag aataaaagcg atttccatag gatacctata
1981 ataagaaagc ttgtgaaggt ttgcatttct tttttatgtt atgtcttatt acattagttt
2041 ccaattaata tatcacatta gagcaagtac atcccttaac aactgatcta ggtgctacag
2101 tggacatatc aacccccaca agatccttgt tatctactcc ctctgattct tttatgactt
2161 gtgcacaaaa atcaagaaaa aaaaactcaa aatgactatt gtccttcatt tatgctgcac
2221 tggaaaagat gataatgtat tttgtgagat ggtggcactt atttggcaag ggcaaacaag
//