LOCUS AK064401 1428 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-108-H04, full insert
sequence.
ACCESSION AK064401
VERSION AK064401.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1428)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1428
/clone="002-108-H04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 123..1139
/db_xref="Osa1:LOC_Os02g56460"
/db_xref="RAP-DB:Os02g0808800"
/note="(RAP Annotation release2) Similar to Cinnamoyl-CoA
reductase (EC 1.2.1.44)"
/note="(Rice Genome Annotation Project)
dihydroflavonol-4-reductase, putative, expressed"
/note="mapping to R02-TIGRv4S1-001560R (Chr.2: short
arm=34558420, long arm=34560252, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG89093.1"
/translation="MSSNFEANNNNNGEKQLVCVTGAGGFIGSWVVKELLIRGYHVRG
TARDPADSKNAHLLELEGADERLSLCRADVLDAASLRAAFSGCHGVFHVASPVSNDPD
LVPVAVEGTRNVINAAADMGVRRVVFTSSYGAVHMNPNRSPDAVLDETCWSDYEFCKQ
TDNLYCCAKMMAEMTATEEAAKRGLELAVVVPSMTMGPMLQQTLNFSTNHVARYLMGT
KKSYPNAVAAYVDVRDVARAHVLVYERPEARGRYLCIGTVLHRAELLRMLRELFPRYP
ATAKCEDDGKPMAKPYKFSNQRLKDLGLEFTPLRKSLNEAVLCMQQKGHLPLIYPVPK
RAYL"
BASE COUNT 339 a 390 c 406 g 293 t
ORIGIN
1 acaccaacat acggagttcg agtgacatac gagcagcagc caacacaagc tcgatcgaaa
61 gttctctcac aagttcagag tagcatttgg ttagtgacag taactggtca gcgtctctca
121 ccatgtcgtc caattttgag gccaacaaca acaacaatgg cgagaagcag ctggtctgtg
181 tgaccggagc aggtggcttc attgggtcgt gggtggtgaa ggagctcctc atccgtggct
241 accacgtcag gggaacagcc agggatcctg ctgacagcaa gaatgctcac ctgcttgagc
301 tggagggagc cgacgagagg ctctccctct gccgcgccga cgtcctcgac gccgccagcc
361 tccgcgccgc cttcagcggg tgccacggcg tcttccatgt cgcctccccg gtgtctaacg
421 accctgacct tgttccggtt gcagtggagg ggacgaggaa cgtgatcaac gcagcggcgg
481 acatgggcgt gcgccgcgtg gtgttcacgt cgtcgtacgg cgccgtgcac atgaacccca
541 accggagccc cgacgccgtc ctcgacgaga cctgctggag cgactacgaa ttctgcaagc
601 aaacagacaa cctgtactgc tgcgccaaga tgatggcgga gatgacggcg acggaggagg
661 cggcgaagag ggggctggag ctggcggtgg tggtgccgtc gatgacgatg ggtcccatgc
721 ttcagcagac gctcaacttc agcaccaacc acgtcgcccg ctacctcatg ggcaccaaga
781 agtcctaccc caacgccgtc gcggcctacg tcgacgtccg cgacgtcgcc cgcgcacacg
841 tcctcgtcta cgagcgcccc gaggcacgcg gccgctacct ctgcatcggc accgtgctcc
901 accgcgccga gctcctccgg atgctcaggg agctcttccc acggtaccct gccactgcaa
961 agtgtgagga tgatgggaag ccgatggcga agccgtataa gttctcgaac cagaggctca
1021 aggatttggg tttggagttc actccactga ggaagagttt gaatgaggcg gtcctatgca
1081 tgcagcagaa gggtcacctg cctctgattt atcccgttcc aaaacgtgct tacctataaa
1141 atcaagataa aaatacgaat tcgtctgttg cgatgggaaa cagagagcaa cagggaaaaa
1201 acaaaggaaa aaaaaggaaa cacaagggct ctgagattgt ttatttgtgc aagtgtagta
1261 ggcatttata ttttgttctt acacatgtaa agcccttctg taatgaacaa taaggtccca
1321 tggagggaac ggcaaatgca aatatggcct tcatttgtat tctgggcttc aggatgtaaa
1381 tttgaatatc attgtattta ttttctatgt tgcagggaat ttccgagt
//