LOCUS AK064379 1618 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-108-D10, full insert
sequence.
ACCESSION AK064379
VERSION AK064379.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1618)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1618
/clone="002-108-D10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1618
/db_xref="Osa1:LOC_Os04g39160"
/db_xref="RAP-DB:Os04g0465700"
/note="(RAP Annotation release2) RNA dependent RNA
polymerase family protein"
/note="(Rice Genome Annotation Project) RNA-dependent RNA
polymerase homolog 1, putative, expressed"
/note="mapping to R04-TIGRv4S1-000595F (Chr.4: short
arm=23068860, long arm=23071398, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 422 a 380 c 450 g 366 t
ORIGIN
1 catattttta taatgatgac gggaaaacag ccacagttgt tggaaaagtt gcaatcacaa
61 aaaatccgtg tctccatcct ggtgatatcc gagtacttga agccatctat gaccctgatt
121 tggtgggcat ggttgattgt cttgtcttcc ctcaaagagg agaaaggcct catccaaacg
181 aatgctcggg gggagatttg gacggcgacc tctattttat tacttgggat gacaaactta
241 ttccagagaa agttgataca cctatggact acacagcaac aaggccgcgc ataatggatc
301 atgttgttac actcgaggaa attcagaagc actttgttga ttacatgata aatgactcgc
361 ttggtgccat ctcaactgcc cacttgattc acgcggaccg ttcgccactg aaagctcgga
421 gtcccgagtg cctccagctg gcaactctgc attccatggc agttgacttc gccaagacgg
481 gagctccagc tgaaatgccg cgaacattga ggccgaggga gtaccccgac ttcatggaac
541 ggtgggagaa gccgatgtac atctccaatg gtgttcttgg caagctctac cgatcagcga
601 tgggtcacat ggagaaatca ggagattcag gagctctctc atcatcctca gcacaaccaa
661 gccccacata cgatcctgac ctcgaggtcc ctggctctga cggattcctg caagctgcag
721 aggagtacta cgagctgtac gaggagaaac tgaccacgct gatgaactac taccgtgcgg
781 agctcgagga cgagatcctg acgggcaaca tccggaacaa gatgctgtac ctgaagaggg
841 acaacaagag gtacttcgag atgaaggacc ggatcgtcgt cgccgtcgac gccctgcaca
901 gggaggcgag gggctggctg ctgagctcca ggaaggaaga ggacgcgtcg cggatggcgt
961 cggcgtggta ccgcgtgacg taccacccag accgccgccg cgggaagcgg ttctggagct
1021 tcccgtggat cgcctgcgac aacctgctgg cgatcaaggc gtcgagccag ctcaggcggc
1081 ggcggcagaa ggacgatgac tccaccgcgg tggtgcagat ggactgcagc gcctgatgtg
1141 gcagaggatt ctctgacttt gagtgactga catgtgggcc tgctggataa gggatccatg
1201 ggtcagtgac aagttagagg gaaataaatt agaggttctc tgacgcgccg tcctaagtga
1261 actttcaact gcacagttca ttgctgtgcg cctgtgcctg tacgctgtac aaatctggtt
1321 cgactaatct tagctgagct gaacagcaga gctccggctc gcaacttgga agaggaaaga
1381 gtttgatgat gaacacctac gtagagtaaa agttcctctt cctaataaaa gagtcttagt
1441 gctgatctac cggtaaggtg gaggcttcca tttcttgttt tctgcgaagg aaagaaactt
1501 agggtgtgtt tagttcacac aaaaattgaa agtttaattg aaaatgaacg atgtaacgaa
1561 aaagttggaa gttcatgtgt gtaggaaagt tttaatgtga tgaaaaggtt actccctc
//