LOCUS AK064367 2916 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-108-C06, full insert
sequence.
ACCESSION AK064367
VERSION AK064367.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2916)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2916
/clone="002-108-C06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2916
/db_xref="Osa1:LOC_Os03g44760"
/note="(Rice Genome Annotation Project) SWI1, putative,
expressed"
/note="mapping to R03-TIGRv4S1-001194F (Chr.3: short
arm=25188246, long arm=25194396, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 676 a 825 c 871 g 544 t
ORIGIN
1 aaaaagagaa aaaggaaaat ctcccctccc gtctcgtcgt ctcctccgct ccttgcgcca
61 tctcgcggcc gaacagggga gaggagggga ggggatcctg gtgaggtctc tgacgcggag
121 cacatggacg cggagatggc ggctcctgcg cttgcggcag ctcatctgct ggactcgccc
181 atgaggccac aggtgagcag atactactcc aagaagaggg gtagcagcca cagcagaaat
241 ggcaaggatg atgccaacca tgacgagtcc aagaaccaat cacccggctt gcccctgagc
301 agacagagcc tgtcctcatc tgccacccac acctaccaca ccggagggtt ctacgagatc
361 gaccacgaga agcttccccc caaatcccca attcatctca agtccatacg cgtggtaaag
421 gtgagcggct acacaagcct ggacgtcaca gtgagcttcc cgtccctcct ggcgctgcga
481 agcttcttct cctcctcccc acggtcgtgc actgggccgg agctcgacga gcgcttcgtc
541 atgagcagca accacgcggc ccgcatcctg cgccgtcggg tggccgagga ggagctcgcg
601 ggcgacgtga tgcaccagga cagcttctgg ctcgtcaagc cctgccccta tgacttctcc
661 gcgtcgtcac cacatgatgt gctgaccccg tcgccgccgc ctgccacagc gcaggcgaag
721 gcgccggcag ccagttcctg ccttctcgac accttgaagt gcgacggcgc cgggtggggc
781 gtgaggcgcc gtgtcaggta cattggtcgc caccacgatg cttccaagga ggccagcgct
841 gccagcctcg atggctacaa cacagaggtc agcgtccagg aggagcagca gcagcgactg
901 cggcttcgac tgcggttgcg acaacgccgg gagcaggaag acaacaagag cactagcaat
961 ggcaagagga agcgggagga ggcagagagc agcatggaca agagcagagc cgccaggaag
1021 aagaaagcca agacttacaa gagtcccaag aaggtggaga agaggcgcgt cgtggaggct
1081 aaagacggcg accctcggcg cggcaaggac cggtggtcgg ccgagcggta cgcagcggcg
1141 gagaggagcc tgctggatat aatgcgctcc catggtgcct gcttcggtgc gccggtgatg
1201 cggcaggctc tgcgggagga agcccgcaag catatcggtg acaccggcct ccttgaccac
1261 ctgctcaagc acatggccgg cagggtaccg gaaggcagcg cggaccggtt ccgtcgccgg
1321 cacaatgcgg atggtgccat ggagtactgg ctggagccgg cggagcttgc cgaggtacgg
1381 cggctggctg gagtgtctga tccatactgg gtgccgccac ctgggtggaa gccaggtgat
1441 gacgtgtccg cagtcgccgg tgacctcctg gtcaagaaga aggtggaaga gctcgctgag
1501 gaggttgatg gtgtaaaaag gcacatcgag cagctcagtt ctaatttggt gcagctggag
1561 aaggaaacaa aatctgaggc agagcgatct tacagctcta ggaaggagaa gtatcagaag
1621 ttgatgaagg caaatgaaaa gctcgagaaa caggtgttat ctatgaagga taaatacaag
1681 cttgtgctgg agaagaatga taaactggag gaacagatgg ctagtctctc cagctccttc
1741 ctttctttga aggaacaatt gctgctgcca agaaatggag ataatctgaa catggaaagg
1801 gaaagggtgg aagtgacttt gggcaagcaa gaaggccttg ttcccggcga accactgtat
1861 gttgatggtg gtgaccggat cagccagcaa gcagatgcca ccgtcgtcca agtcggcgag
1921 aagaggacgg cgaggaagag cagcttccgc atctgcaagc cacagggaac gttcatgtgg
1981 ccacacatgg cgtctggcac gagcatggcc atcagtgggg gaggcagcag cagctgccct
2041 gtcgcctccg ggccagagca gctccctcgc agcagcagct gccccagcat tgggcctggt
2101 ggcctcccgc cgtcgtcacg agccccagcc gaggtggtgg tcgcgtcgcc actggacgag
2161 cacgtggcgt tccgcggggg cttcaacacg ccgccctcgg catcgtccac caacgccgcc
2221 gctgccgcca agctgcctcc cctgcccagc ccgacgtcac ctctccagac acgggccctg
2281 ttcgccgctg gcttcactgt cccggcatta cacaacttct ccggcctcac cttacgccat
2341 gtggactcct cgtcgccgtc gtccgcgcca tgcggtgcta gggagaagat ggtgaccctg
2401 ttcgatggag actgccgggg gatcagcgtc gtgggcaccg agctggcact ggccactccg
2461 tcctactgct gatcaagttc ttccctcccc ttctgcttcg ccacccgccc ccataattaa
2521 ttaattaatc acggaaccaa aagatttatt ctagtttaag gtagagaaat gataacataa
2581 gaagacaata acaacacaca cacacacaca caaaaatata agatagaaga ggaagagtta
2641 tttttctcgg ttacaaactc aaagttgcag tttagaactt ggtaagtaga tgtttcaggc
2701 tggttggtca gttaatggtt tgagtcccca tgtcagtact gatcgatgta agcctgacaa
2761 attttggtag gctgatactc tccctagccc ttcgcgtgac acattcgaag tggaatgtgt
2821 ccagttttct gacgggctag gtccgctatt ttgtcctgga tacatattca ttattcatca
2881 ttgccattgg tagtatataa tttaagatct gattct
//