LOCUS AK064355 1572 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-108-B01, full insert
sequence.
ACCESSION AK064355
VERSION AK064355.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1572)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1572
/clone="002-108-B01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 147..1385
/db_xref="Osa1:LOC_Os02g22020"
/note="(Rice Genome Annotation Project) DNA binding
protein, putative, expressed"
/note="mapping to R02-TIGRv4S1-000598F (Chr.2: short
arm=13096202, long arm=13098214, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG89081.1"
/translation="MEVDHADRDGARRRCREYLLALEEERRKIQVFQRELPLCFDLVT
QTIEGMRSQMDAAGSEETVSDQGPPPVLEEFIPLKPSLSLSSSEEESTHADAAKSGKK
EEAETSERHSSPPPPPPEAKKVTPDWLQSVQLWSQEEPQQPSSPSPTPTKDLPCKPVA
LNARKAGGAFQPFEKEKRAELPASSTTAAASSTVVGDSGDKPTDDDTEKHMETDKDND
KDAKDKDKEGQSQPHRKPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLT
NDEVKSHLQKYRLHTRRPSSTGQSSAAAGVPAPPAPQFVVVGSIWVPPPEYAAAAAAQ
QHVQLAAAGNNASGSANPVYAPVAMLPAGLQPHSHRKQHQQQQQGQRHSGSEGRRSGD
AGDGSSSSPAVSSSSQTTSA"
BASE COUNT 328 a 511 c 490 g 243 t
ORIGIN
1 cttcctactc cttcctcttc cttgttcctt ccttccttcc tcaccccacg aacgcgcaca
61 ccaacctttc ccatccctag ctgctgccct tccatcggat ccacggatcg agacctggca
121 cggcggcgga ggacgggccg gcggagatgg aggtggacca cgcggaccgc gacggcgcgc
181 ggcgccggtg ccgcgagtac ctgctcgcgc tcgaggagga gcgccgcaag atccaggtgt
241 tccagcggga gctccctctc tgcttcgacc tcgtcaccca gactatcgag gggatgagga
301 gccagatgga cgccgccggc agcgaggaga cggtcagcga ccagggcccg ccgccggtgc
361 tcgaggagtt catcccgctc aagcccagcc tctcgctgtc ctcctccgag gaggagagca
421 cccacgccga cgccgccaag tcaggcaaga aggaggaggc cgagacgtcg gagaggcatt
481 cgtcgccgcc gccgccgccg ccggaggcca agaaggtgac gccggattgg ctccagtccg
541 tgcagctctg gagccaagaa gaaccccagc agccatcgtc tcctagccca actcctacca
601 aggatttacc gtgcaagccg gtggcgctga acgccaggaa ggccggcgga gcgttccagc
661 cgttcgagaa ggagaagcgc gccgagctgc cggcgtcgtc gaccacggcc gcggcgagct
721 cgaccgtggt cggagacagc ggcgacaagc ccaccgatga tgacacggag aaacacatgg
781 agacggacaa ggacaacgac aaggacgcca aggacaagga caaggaaggc cagtcgcagc
841 ctcaccggaa gcctcgccgg tgctgggcgc cggagctcca ccgccgcttc ctgcaagcgc
901 tgcagcagct gggcgggtcc catgtagcga cgcccaagca gatccgggag ctgatgaagg
961 tggatggcct caccaacgac gaggtcaaga gccatttgca gaagtatcgt ctacacacga
1021 ggaggccgag ctcgacgggg cagagcagcg ccgcagccgg cgtccccgcc ccgcctgcgc
1081 cgcagttcgt cgtcgtcggg agcatctggg tacccccgcc ggaatacgct gccgcggccg
1141 ccgcacagca gcacgtgcag cttgccgccg ccggcaataa tgcgtccggg agcgccaacc
1201 ccgtgtacgc tccggtggcg atgctgccgg caggcttgca gccgcattcg catcggaagc
1261 agcaccagca gcagcagcaa ggacagagac attccgggtc ggaaggccgg cggagcgggg
1321 acgccggcga tggcagctcg tcctccccgg ccgtctcgtc gtcgtcgcag accacctccg
1381 cttgattagt gtagattcgt cgattacatc attatatgta cgtagtacga gagtgcatca
1441 catcaaagtg cagcttgatt ttggagctag ctagcttaaa ttaagggtta attactgatt
1501 gcttcgtgat cgcacacacc acatttgctg ttttgtttgt aaaaaagata ataaaataca
1561 taaatattaa gg
//