LOCUS AK064322 1715 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-107-F02, full insert
sequence.
ACCESSION AK064322
VERSION AK064322.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1715)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1715
/clone="002-107-F02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1715
/db_xref="Osa1:LOC_Os02g03600"
/db_xref="RAP-DB:Os02g0128400"
/note="(RAP Annotation release2) Heat shock protein DnaJ,
N-terminal domain containing protein"
/note="(Rice Genome Annotation Project) dnaJ domain
containing protein, expressed"
/note="mapping to R02-TIGRv4S1-000096R (Chr.2: short
arm=1468980, long arm=1474672, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 460 a 407 c 463 g 385 t
ORIGIN
1 aaaaaaccaa ttaattacgt gtaatcaaac cggtctgagg acggcggctg cggcggcggc
61 ggcggcggag cgggagacct cacctctgcg cccctcgtcg caccaccacc accgagtcat
121 cccgcgtccg cggcgtcggc gaggcgcatc gaggcggagg tcgccggcgc gaggcaggct
181 cctctgcccc tccaaccccc aacccaaacc ctgcacgacc tgccgcgccg ccgccaaacc
241 cgagggccat ccggaggagg agcaattcgg tgtggctctg gtggatttca tcgatttctc
301 gacgctacca ctggatttag gtttatgaag ctctaggagt ataggttttc attgcttgtt
361 tgccagtttg ttagagcaag gatgggaatg gactactaca atatcctcaa ggtgaaccgc
421 aatgcgacat tagaggacct caagaagtca taccggcggc tcgcgaggac gtggcacccc
481 gacaagaatc caactggcgg cgcggaggct gaggccaagt tcaagcagat aactgaggcc
541 tatgaggtac taagtgatcc agaaaaacgt gcaatctatg accgatatgg tgaagaaggc
601 ttaaagggaa tgcctccacc tggttcacag agccggactt ccgcagctgc tggctcaagt
661 ggtcctagta atttccggta caatccgagc gaccctgatg atttctttgc tgagttcatg
721 gcaagcaaca aaccttactc cttcgaccaa gaacgaacgc ggttccaacc acgatcacag
781 tggacagcag ggaacactag aggtgaagca tcttctgctt cacataagga aagcagtacc
841 agtacaagtc aactagaaaa accagcagct attgagaaaa ccttactgtg cactcttgag
901 gaattgtata atggaacaaa aaggaagatg aagatcacta ggaatgttgc aaatactgat
961 ggaaaggtag aaatcgagac agaggtctta cctgttgaag tgttgcccgg ctggaaaaag
1021 ggaacaaaga taacatttcc caacaaaggc gataggctat ctggtcagtt gccacaagac
1081 ctcaccttcg tcatcgatct gaagccccac gatgtgtacc tcctggaagg gaacaatctt
1141 gtagcaaccc aggtgatccc tctcgtggat gctcttgctg ggacaaccat acatctgaag
1201 acccttgacg gcaggaatct tcccatcagg gtggaggaag tcgtgcgtcc tgggcatgag
1261 attgtgctcg cgaacgaagg gtggccgatc aggaaggaac cggggaagaa ggggaacctg
1321 aagatcaagt ttgatgtgac cttcccgacg aggctgtcat cttcacagcg tgcagccatc
1381 aggcagatca tgggtggtta gctagagaag ataagataca ccaacagatt cgtcatacag
1441 aaacaagaaa ctatagttgt gctagtctga tagatggagc tggattcagg attcagatag
1501 gttcttctgt tgttacaggc atatagtggt gcggttttta ttctaccttg ttcttgctct
1561 gtaagtgaca gagaagtttt cgttctgttg atcattggaa aagattctaa tggtgatcgt
1621 gctataggct gattctgaca tagtgacatg tagtagttct gaatgccttg ttttggattg
1681 gataaataga gcatgtgctc agtcagttct tgcct
//