LOCUS       AK064209                2132 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:002-104-E09, full insert
            sequence.
ACCESSION   AK064209
VERSION     AK064209.1
KEYWORDS    oligo-capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2132
                     /clone="002-104-E09"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             45..1793
                     /db_xref="Osa1:LOC_Os01g10140"
                     /db_xref="RAP-DB:Os01g0198000"
                     /note="(RAP Annotation release2) RNA dependent RNA
                     polymerase family protein"
                     /note="(Rice Genome Annotation Project) RNA-directed RNA
                     polymerase, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-000321R (Chr.1: short
                     arm=5304216, long arm=5314082, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG89036.1"
                     /translation="MGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPS
                     MLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNL
                     IALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGI
                     PLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQ
                     VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSD
                     FDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTR
                     FAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKV
                     NIPRDLMVKQYPHFMDRSPSYHSSSILGKIYDKAGDPKPLRSDNVQPTSISSLPCFAE
                     RDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLYGASEFEE
                     TPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEGNAVVC
                     SLQLLRNFRFTKKYRK"
BASE COUNT          641 a          432 c          478 g          581 t
ORIGIN      
        1 tgttggagcc acaggacatt gtggattgtg ctgcaagcaa attgatgggg tctaacaaca
       61 ccactgaata tcctcttctt attcaactcc gcctgttcta caatggatct gctgtaaagg
      121 gaacagtcct agttgacaag cggcttcctc ctaggactat acatatccga ccatcaatgt
      181 taaaaataaa aacttatcca gaattatctg gtgtccaatc tgtcaactca ttggacatag
      241 tctctgcacg aaatgccaag aaaagtctat ctggggttca gtccgtgaat tcttttgaaa
      301 tagtctctac aagcaatcga tcaggaagga cattcacatc aaataattta attgcattac
      361 ttcactatgg aggagttcca gaagaattct ttatggagct tctgcagact gcgattgaag
      421 aggctgacaa tgctcgtttt gattatgctg gcgcactgaa cattgcattc aactatgctg
      481 acatggaaga ttcaatgcca gcacggatga ttctttccgg aatcccacta gaagagtcgt
      541 acttgcaatc taggctggat ttcttgtctc tactggaaag aaaaggaatc aagaatggaa
      601 agataccaat tgatgactgc tattatttga tgggtactgc agaccctaca ggaaaacttg
      661 gacctaatga agtctgcgtg atacttgatt atggccaagt ttctggagat gttcttgtgt
      721 ataaatatcc tggcttacat cctggtgata tacatgtctt gaaggcaaca tatagtagcg
      781 acatagagaa ggttgtggga aattctaaac atgcgatact cttccctact actggacaac
      841 ggtctttggc tgatgagatg gccaatagtg attttgatgg tgacatctac tgggtctcat
      901 taaacccaaa gctgttagaa cattttaaac cttcgaaacc atgggttcca gctattacac
      961 caaatgggac caagcaaaag ggacccgagg attttaatga atccgagctt gaaagagtgc
     1021 tatttcatga gttcttgaaa acaagatttg cacctagtta tgcgcgtgct acggcagcta
     1081 ctaactggtt agtatatatg gatcggctat taactgtttc acttgacgaa agtgaaaaga
     1141 aactaattga gaaaaagatg ctcaagttag ttgaccttta ttatttggct ttggatgctc
     1201 caaagatggg gaacaaggtc aatattccac gtgatctaat ggtaaaacaa tacccccact
     1261 tcatggaccg cagtccttcg taccattcgt cgtccatact tggaaaaatc tatgataaag
     1321 caggtgatcc aaaaccgctg cgatctgata atgttcaacc aaccagtata tcatcgctcc
     1381 catgtttcgc ggagagagac gtgcctccag caatcaagca actctggcaa caccgctata
     1441 acgagtactt ggctgatagt tcacttctct atgccgaaga ggcggatgaa gaagaaaaga
     1501 agataaagtt tcaggaactc tatgaaaagt acaagcattt gctctacggt gcatctgaat
     1561 ttgaagagac accgagggac ctcgacgacg tgttctccga ggcctgtgca atctaccaga
     1621 tcgcgtatga gaaagcacgg tctgccaaca acgtcgccag atgtggcttc gcttggaaag
     1681 ttgccggccg tgcattgtgc catttctaca cggtcaagaa tgagggtaac gctgtggttt
     1741 gctcgctcca acttctccgc aacttcagat ttaccaagaa gtaccgcaag tgaagtagca
     1801 tcgcatttag ggatagttaa tttgtatgaa gtttggcgta tgtagtattg taacagcaat
     1861 ataggagcag gagcggacta ataaggactt cttaagctga tggtttagta ggaagatgtc
     1921 aggacagact ttataactaa gctgatgggc ctattaacat ggctgcttga agtgaacaca
     1981 agcagtcaag ctaaagattg ctacgttagc tctggaatca tttcagcatg catgcatgca
     2041 tcatgtatca ctgaacaaat gcacattcag agcttgcatg actgacatgt gaagtctaaa
     2101 tgaaatatca agagcttgca tattcagagt gg
//