LOCUS AK064209 2132 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-104-E09, full insert sequence. ACCESSION AK064209 VERSION AK064209.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2132) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2132 /clone="002-104-E09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 45..1793 /db_xref="Osa1:LOC_Os01g10140" /db_xref="RAP-DB:Os01g0198000" /note="(RAP Annotation release2) RNA dependent RNA polymerase family protein" /note="(Rice Genome Annotation Project) RNA-directed RNA polymerase, putative, expressed" /note="mapping to R01-TIGRv4S1-000321R (Chr.1: short arm=5304216, long arm=5314082, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG89036.1" /translation="MGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPS MLKIKTYPELSGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNL IALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDSMPARMILSGI PLEESYLQSRLDFLSLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILDYGQ VSGDVLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSD FDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTR FAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKV NIPRDLMVKQYPHFMDRSPSYHSSSILGKIYDKAGDPKPLRSDNVQPTSISSLPCFAE RDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEKKIKFQELYEKYKHLLYGASEFEE TPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWKVAGRALCHFYTVKNEGNAVVC SLQLLRNFRFTKKYRK" BASE COUNT 641 a 432 c 478 g 581 t ORIGIN 1 tgttggagcc acaggacatt gtggattgtg ctgcaagcaa attgatgggg tctaacaaca 61 ccactgaata tcctcttctt attcaactcc gcctgttcta caatggatct gctgtaaagg 121 gaacagtcct agttgacaag cggcttcctc ctaggactat acatatccga ccatcaatgt 181 taaaaataaa aacttatcca gaattatctg gtgtccaatc tgtcaactca ttggacatag 241 tctctgcacg aaatgccaag aaaagtctat ctggggttca gtccgtgaat tcttttgaaa 301 tagtctctac aagcaatcga tcaggaagga cattcacatc aaataattta attgcattac 361 ttcactatgg aggagttcca gaagaattct ttatggagct tctgcagact gcgattgaag 421 aggctgacaa tgctcgtttt gattatgctg gcgcactgaa cattgcattc aactatgctg 481 acatggaaga ttcaatgcca gcacggatga ttctttccgg aatcccacta gaagagtcgt 541 acttgcaatc taggctggat ttcttgtctc tactggaaag aaaaggaatc aagaatggaa 601 agataccaat tgatgactgc tattatttga tgggtactgc agaccctaca ggaaaacttg 661 gacctaatga agtctgcgtg atacttgatt atggccaagt ttctggagat gttcttgtgt 721 ataaatatcc tggcttacat cctggtgata tacatgtctt gaaggcaaca tatagtagcg 781 acatagagaa ggttgtggga aattctaaac atgcgatact cttccctact actggacaac 841 ggtctttggc tgatgagatg gccaatagtg attttgatgg tgacatctac tgggtctcat 901 taaacccaaa gctgttagaa cattttaaac cttcgaaacc atgggttcca gctattacac 961 caaatgggac caagcaaaag ggacccgagg attttaatga atccgagctt gaaagagtgc 1021 tatttcatga gttcttgaaa acaagatttg cacctagtta tgcgcgtgct acggcagcta 1081 ctaactggtt agtatatatg gatcggctat taactgtttc acttgacgaa agtgaaaaga 1141 aactaattga gaaaaagatg ctcaagttag ttgaccttta ttatttggct ttggatgctc 1201 caaagatggg gaacaaggtc aatattccac gtgatctaat ggtaaaacaa tacccccact 1261 tcatggaccg cagtccttcg taccattcgt cgtccatact tggaaaaatc tatgataaag 1321 caggtgatcc aaaaccgctg cgatctgata atgttcaacc aaccagtata tcatcgctcc 1381 catgtttcgc ggagagagac gtgcctccag caatcaagca actctggcaa caccgctata 1441 acgagtactt ggctgatagt tcacttctct atgccgaaga ggcggatgaa gaagaaaaga 1501 agataaagtt tcaggaactc tatgaaaagt acaagcattt gctctacggt gcatctgaat 1561 ttgaagagac accgagggac ctcgacgacg tgttctccga ggcctgtgca atctaccaga 1621 tcgcgtatga gaaagcacgg tctgccaaca acgtcgccag atgtggcttc gcttggaaag 1681 ttgccggccg tgcattgtgc catttctaca cggtcaagaa tgagggtaac gctgtggttt 1741 gctcgctcca acttctccgc aacttcagat ttaccaagaa gtaccgcaag tgaagtagca 1801 tcgcatttag ggatagttaa tttgtatgaa gtttggcgta tgtagtattg taacagcaat 1861 ataggagcag gagcggacta ataaggactt cttaagctga tggtttagta ggaagatgtc 1921 aggacagact ttataactaa gctgatgggc ctattaacat ggctgcttga agtgaacaca 1981 agcagtcaag ctaaagattg ctacgttagc tctggaatca tttcagcatg catgcatgca 2041 tcatgtatca ctgaacaaat gcacattcag agcttgcatg actgacatgt gaagtctaaa 2101 tgaaatatca agagcttgca tattcagagt gg //