LOCUS AK064178 2281 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-104-B01, full insert
sequence.
ACCESSION AK064178
VERSION AK064178.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2281)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2281
/clone="002-104-B01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 63..1142
/db_xref="Osa1:LOC_Os06g01230"
/db_xref="RAP-DB:Os06g0101800"
/note="(RAP Annotation release2) Similar to NAC-domain
protein 1-1"
/note="(Rice Genome Annotation Project) nam-like protein
1, putative, expressed"
/note="mapping to R06-TIGRv4S1-000004R (Chr.6: short
arm=152417, long arm=155618, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAG89027.1"
/translation="MKQGKVEMTPAVAAAAVLPVGFRFRPTDEELVRHYLKGKIAGRS
HPDLLLIPDVDLSTCEPWDLPAMSVIKSDDPEWFFFAPRDRKYPGGHRSNRSTAAGYW
KATGKDRLIRSRPAGPLIGIKKTLVFHRGRAPRGLRTAWIMHEYRTTEPHFQSGKNGS
FVLYRLFNKHEQDDTHTPASNLDQQLSTSSQGNPQNGTPAVQPALASIMKDHQTLPSS
GFSQLTEIQDASTSVHDKEQTVAHDDAFLDVLSQLPDLEPEQRYNGFPNITSPIRPYS
DHPFVGNLGEQDLSAHFGSTLSEQDLQSLLFSPNYTKMDKHPTGNVESNPTASSNNPN
NNTLLMDSWRKNDSYQMLLIQVRIF"
BASE COUNT 619 a 598 c 531 g 533 t
ORIGIN
1 atataaagtg gttctcaaaa aaaaagtgaa agacagagag gtcggagaag ggaaaagtgg
61 cgatgaaaca agggaaagtg gagatgacgc cggcggtcgc cgccgcggcg gttctgccgg
121 tggggttccg tttccggccg acggacgagg agctggtgag gcactatctg aagggaaaga
181 tcgctgggcg gagccaccct gacctcctcc tcatcccgga cgtggacctc tccacctgcg
241 agccctggga tctcccggcc atgtccgtta tcaagtccga cgaccccgag tggttcttct
301 tcgccccccg cgaccgcaag tatcccggcg gccaccgctc caaccgctcc accgccgccg
361 gctactggaa ggccaccggc aaggaccgcc tcatccgctc ccgccccgcc ggccccctca
421 tcggcatcaa gaagaccctc gtcttccacc gcggcagagc tccgcggggc ctccgcaccg
481 cctggatcat gcacgagtac cgcaccactg agcctcactt ccaatcaggc aaaaacggta
541 gcttcgttct gtatcgcctg tttaacaagc acgaacaaga tgatacccat accccggcct
601 ccaatttgga ccaacaattg tccacgtctt ctcaaggcaa tccccaaaat ggcacacctg
661 ctgtccaacc ggccctcgcc tcaataatga aggatcatca gaccttacca tcatctggtt
721 tcagccaact gactgaaata caagatgcta gtacatctgt ccatgacaaa gagcaaactg
781 tagcccatga cgatgctttt ctggacgtgt tatctcaact tccagaccta gagcctgagc
841 aaagatacaa tggattccct aatatcacct ctccaattcg cccttacagc gatcaccctt
901 ttgtcggcaa tctgggtgag caagatcttt cagcgcattt tggcagtacc ttgtctgagc
961 aggacctgca aagtttgttg tttagtccaa attacaccaa aatggataag caccccactg
1021 gaaacgtaga gtctaatcct accgcgtcgt ccaacaatcc aaacaataac acattactca
1081 tggatagttg gaggaagaat gattcatatc agatgcttct aattcaggtt agaatattct
1141 agaatttact cttacacatt ttgactaatc tcatgagaac attttcttcc cttctatttc
1201 ctgttctaaa caaagcgtgc agacaacaca gatgctactt gctgttcttc ttcaatcaat
1261 gcaccacaaa cagaaacaag tgatgctaat cttgaagcaa gagcccagag tagcagcatg
1321 gtctacagtg gagtagccga gggctccccc ttgtgcaacc aagatcaact acactccgca
1381 ttcaatcctc acatggagtc acaaaagagt ggagccttct gttgggctgg attgtggacc
1441 ccttatcccc agcattggtt cgatactatc gtagaaccgg gcaggagtgg catgacattt
1501 tcagatgcct tgaaagaaca aggtcaggaa caggcacctt caatgaagca cttgacagct
1561 caagatctcg ttgatccaca acaaggaact gctgcaagaa ggatccgcct tgtatgctct
1621 gttgagaggg catcagtctc tcaacctgta tcctcacatt tgcagagtga atatgaagct
1681 ggatcatgct gtaacactcg caattcatct aataacaaga aggaaagtgt caggagtgaa
1741 gatgaagctg gatcatgttg taacactgga agttcatcta ataaccacag cgaggaaaat
1801 gacgatgcag cctcccagat tatggatgga gaaccaatgc atattcagtg caaagaggat
1861 acccctattc aagtggatca ttcagcggaa gttatggaca agctccaagg cttctccttt
1921 catgaagaga tgttggtaca tgctaatcag ccccgtggaa ctaatctaaa gcagaggctg
1981 ttgagagtgg agtctagaaa tagcaatgag aataatgtac cttcgttgga gacacgagaa
2041 cagcagcatg cacctcatat tcagaaatgg actagctctg ttgtgcgact agggtggggg
2101 tggcagtggc cggctctctt tgtgatggcc ggctctctgc ttttgttggt tggtgtgtgg
2161 aaatctctga atcacactac ctgactaatg taaataaatg gtcgcttagc ttaagcttgg
2221 gagcctcata tatactacta catatgttct ttggaaagta ctgcaggtaa ctggttcata
2281 t
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