LOCUS AK064011 1868 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-G12, full insert
sequence.
ACCESSION AK064011
VERSION AK064011.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1868)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1868
/clone="001-124-G12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 282..1658
/db_xref="Osa1:LOC_Os01g09460"
/db_xref="RAP-DB:Os01g0190400"
/note="(RAP Annotation release2) Similar to Hexokinase"
/note="(Rice Genome Annotation Project) hexokinase-1,
putative, expressed"
/note="mapping to R01-TIGRv4S1-000295R (Chr.1: short
arm=4816956, long arm=4819931, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG88962.1"
/translation="MAAVEAEKVVAELRERCATPASLLRDVAAAMAGEMGAGLEKEGG
SRVKMLLSYVDKLPTGREDGLFYGLDLGGTNFRVLKVHLGGSKKHVVNSESREVSIPP
HLMSGTSSELFGFIAGELGKFVAEEEEGTDMPNGKKKELGFTFSFPVRQRSVASGTLV
KWTKAFSIDDAVGEDVVAELQTAMVKQGLDMHVAALINDAVGTLAGARYYDEDVVAGV
IFGTGTNAAYVEKANAIPKWEGELPNSGDMVINMEWGNFYSSHLPVTEYDEALDKESL
NPGEQIYEKLTSGMYLGEIVRRVLLKLSLQSGIFGSIDNSKLKTCFHLRTPHISAMHH
DETPDLKIVAEKLHQILEITHTSLEIRKMVVEICDIVARRAARLAAAGVAGILMKLGR
NGGINNQRSVIAIDGGLFEHYTKFRECLESTLGELLGEEASKSVAVKHANDGSGIGAA
LIAASQSR"
BASE COUNT 499 a 373 c 523 g 473 t
ORIGIN
1 agatggatca aaaccgccac tgaaagggat caactaaact actgatgaaa aaaagttgag
61 tgctttagac aaaaacacaa aactttcacg tgcctccctc caatcccaga ttatttttct
121 atagatcgat cgatcgagcc ccgtgaatgc gattctgcgc gcatttccgg agcgtctttt
181 gatcgtggtt gggtttgtct gaaccgaact ccaaaggtct cgcctttctt gctctgaagc
241 ttttctttag cttttcgatt cgcctgtcgg ggaccgggat catggcggcg gtggaggcgg
301 agaaggtggt ggcggagctg cgggagaggt gcgcgacgcc ggcgtcgctg ctgcgggatg
361 tggcggcggc gatggccggc gagatgggcg ccggcctgga gaaggagggt gggagcaggg
421 tcaagatgct gctctcctac gtcgacaagc tccccactgg gagagaggat ggattgttct
481 atggattgga cctaggagga acaaacttcc gggtgctcaa ggttcatctt ggtggcagca
541 agaagcatgt cgtcaactct gaatccaggg aagtcagcat cccaccacac ctgatgtcag
601 ggacctcctc ggaattgttt ggtttcattg ctggggaatt aggcaagttt gttgctgaag
661 aggaggaggg tactgacatg ccaaacggca agaagaaaga gctaggattc accttctctt
721 ttcctgtgag gcaacgatct gtggcatcgg gtacccttgt caagtggaca aaggcgtttt
781 ccattgatga tgcagtaggt gaagatgtgg tggctgaact acaaacggct atggtgaaac
841 aaggtctgga catgcatgta gctgcattga ttaatgatgc tgttggaaca ttggctggag
901 caagatacta cgatgaagat gttgtcgcag gtgtgatatt tggtactggc acaaatgctg
961 catatgttga gaaggcaaat gctataccaa aatgggaagg ggagttgccc aattcagggg
1021 atatggtcat caatatggaa tggggtaatt tctattcatc gcatcttcca gttactgaat
1081 acgatgaagc attagacaag gaaagcttaa accctggaga gcagatatat gagaagttaa
1141 catcaggaat gtatttaggt gaaatcgtaa gaagagtgct gcttaaactg tccttgcagt
1201 ctggaatttt cggttctata gataactcca agctcaaaac ttgtttccat ctgcggactc
1261 cgcacatttc tgcaatgcac catgatgaaa cacctgacct aaagatagtg gctgaaaaat
1321 tgcatcaaat cctagagatt acacatacat ccttagagat aaggaaaatg gttgtcgaaa
1381 tatgcgatat cgtggcaagg agggcagctc ggctggctgc tgctggtgtt gcagggatcc
1441 tcatgaagct tggaagaaat ggcggcatca acaatcagcg ctcggtcatc gccattgatg
1501 gaggtttgtt cgaacactac accaaattca gggaatgttt ggagagcacg ttgggtgagt
1561 tgctgggaga ggaggcttcc aagtcggtag ccgtcaagca cgcgaacgac gggtcaggga
1621 taggggctgc ccttattgca gcctctcaat ctcgatgaaa atttgctaga taaatagtag
1681 tatatgccgt ccatttttgc tctggagtga aaaaaattat tgaaaaaacc tagctttgtt
1741 gtatgtgctg cttgggcatg gtggaactgg aagcagtctg taaccaaaat gaggcttgat
1801 atactgtcgc cctgcatagt tgtaacctga aataaaattg gaactgcaaa accttcattg
1861 ttacctat
//