LOCUS       AK063961                1829 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-123-G10, full insert
            sequence.
ACCESSION   AK063961
VERSION     AK063961.1
KEYWORDS    oligo-capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1829
                     /clone="001-123-G10"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             84..1505
                     /db_xref="Osa1:LOC_Os11g01869"
                     /db_xref="RAP-DB:Os11g0109900"
                     /note="(RAP Annotation release2) Double-stranded RNA
                     binding domain containing protein"
                     /note="(Rice Genome Annotation Project) RBP2 protein,
                     putative, expressed"
                     /note="mapping to R11-TIGRv4S1-000022R (Chr.11: short
                     arm=456197, long arm=460681, direction=reverse) for TIGR
                     Pseudomol ver4"
                     /protein_id="BAG88937.1"
                     /translation="MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQK
                     AGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK
                     SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQY
                     IGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPK
                     PLKIKKGGFKKKWNKRKFMKKDGQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGT
                     LFLQPCEEAKRVEAEPPRDIEMVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVPP
                     NEEAISVKQEPSIDAAILQPKEEASSVKQEPFIDTAMLQACKEAGSVELGPARDTVIS
                     QLNEQDRGVKQEPAGDTAVPQPDVDARVVKEESPRTEPNGEATNMKETPKNSAVCNSP
                     ETKEFGDITAMGSDPPATNMSEE"
BASE COUNT          563 a          390 c          467 g          409 t
ORIGIN      
        1 atcgcaccac gcacacaacc aaaacccttc tcttctctct cgactctcga cgacgctgcg
       61 gcggcggtgg cggcgaggtg ggaatggaca tgccgcccac gccccttccg ccggagaccg
      121 ccaacacctc gcccgctccc aacggcgcca ccgccggaat cagggttgag aactgctacg
      181 tcttcaagag ccggctgcaa gagtatgcgc agaaagccgg cctccagact ccagagtatc
      241 ataccttcaa ggagggacct tcccatgagc ctgtcttcaa gtccacagtg gtgattaata
      301 acaccagcta tgactccctg cccggattct tcaacagaaa ggctgcagaa cagtctgctg
      361 ctgaagttgc cctcatggaa attgtcaagt ccataccagc caacgcaaac atcccagctg
      421 ttcaagagac tgggctgtgc aagaatcttc ttcaggagta tgcacagaag atgaattatg
      481 ccattccatc ttatatttgc accaaatcag cctcaggctt agctcctttc atatgcactg
      541 tagagattgg tggaatacaa tatattggtg ctgcagccag aacaaagaaa gatgcagaga
      601 taaaagctgc tcgaactgct cttctggcaa ttcaaggtca atcagagggt tctgcaaatg
      661 gtgcgacaaa atatattgta gttcctggta aaagggtagg taaggaggta gagaaaatgc
      721 caattgaaac ccccaaacca cttaaaataa agaaaggtgg tttcaagaag aaatggaaca
      781 agaggaaatt catgaagaag gatggtcaag ctgttgtgga aaaggatgaa gctagagtgg
      841 ctggagatgc tcacgattct gacgtcctaa tgcagccaac agtaataaca caggaggcat
      901 cttgtggcac tctgttcctt caaccttgtg aggaagctaa aagagtagaa gctgagccac
      961 ctagagatat tgaaatggta caacctgata aggagaacca acacagtgac gctgcattgg
     1021 tgcaacctga tgatgaagct agagtagaac aggagccatc cagagatatt tcagtggtgc
     1081 cacctaatga ggaagctata agtgttaagc aggaaccatc catcgatgct gcaattctgc
     1141 aacctaaaga ggaagcttca agtgtaaagc aggagccatt catcgatact gcaatgctgc
     1201 aagcttgtaa ggaagctgga agtgtagaac ttgggccagc cagagatact gtaatttctc
     1261 aacttaatga gcaagatagg ggtgtaaagc aggagccagc tggtgacact gcagtgccac
     1321 aacctgacgt ggacgctagg gtcgtaaagg aggagtcacc aagaacggaa cctaatgggg
     1381 aagctacgaa catgaaggag acaccaaaga actctgcagt gtgtaattct ccagagacaa
     1441 aggaatttgg agatattaca gcaatgggtt cagatcctcc cgcaactaat atgagcgaag
     1501 aataagctgt ggttgttgaa tcaaaatgca atagctttag tgtgttcacc tgcagagggc
     1561 gaagaataag ctgcggttgt tgaatcaaaa tgcaatagcc ttagtgtgtt cacctgcaga
     1621 ggtgtgaaac atgaatggct ggcttttcca gtttaaaagg aggcagctgg aataggaaga
     1681 tgtatgtggg ctgagaatag ttagttcata tttgtcattg ttagctaggc atgtgtatgc
     1741 ctaatgatat gaatgaaatg tattacctgc tgctttagtg agcactactt tgaaaagaag
     1801 gggaaaaaat gaattcgagg tttctgatc
//