LOCUS AK063961 1829 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-123-G10, full insert sequence. ACCESSION AK063961 VERSION AK063961.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1829) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1829 /clone="001-123-G10" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 84..1505 /db_xref="Osa1:LOC_Os11g01869" /db_xref="RAP-DB:Os11g0109900" /note="(RAP Annotation release2) Double-stranded RNA binding domain containing protein" /note="(Rice Genome Annotation Project) RBP2 protein, putative, expressed" /note="mapping to R11-TIGRv4S1-000022R (Chr.11: short arm=456197, long arm=460681, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG88937.1" /translation="MDMPPTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQK AGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQY IGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPK PLKIKKGGFKKKWNKRKFMKKDGQAVVEKDEARVAGDAHDSDVLMQPTVITQEASCGT LFLQPCEEAKRVEAEPPRDIEMVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVPP NEEAISVKQEPSIDAAILQPKEEASSVKQEPFIDTAMLQACKEAGSVELGPARDTVIS QLNEQDRGVKQEPAGDTAVPQPDVDARVVKEESPRTEPNGEATNMKETPKNSAVCNSP ETKEFGDITAMGSDPPATNMSEE" BASE COUNT 563 a 390 c 467 g 409 t ORIGIN 1 atcgcaccac gcacacaacc aaaacccttc tcttctctct cgactctcga cgacgctgcg 61 gcggcggtgg cggcgaggtg ggaatggaca tgccgcccac gccccttccg ccggagaccg 121 ccaacacctc gcccgctccc aacggcgcca ccgccggaat cagggttgag aactgctacg 181 tcttcaagag ccggctgcaa gagtatgcgc agaaagccgg cctccagact ccagagtatc 241 ataccttcaa ggagggacct tcccatgagc ctgtcttcaa gtccacagtg gtgattaata 301 acaccagcta tgactccctg cccggattct tcaacagaaa ggctgcagaa cagtctgctg 361 ctgaagttgc cctcatggaa attgtcaagt ccataccagc caacgcaaac atcccagctg 421 ttcaagagac tgggctgtgc aagaatcttc ttcaggagta tgcacagaag atgaattatg 481 ccattccatc ttatatttgc accaaatcag cctcaggctt agctcctttc atatgcactg 541 tagagattgg tggaatacaa tatattggtg ctgcagccag aacaaagaaa gatgcagaga 601 taaaagctgc tcgaactgct cttctggcaa ttcaaggtca atcagagggt tctgcaaatg 661 gtgcgacaaa atatattgta gttcctggta aaagggtagg taaggaggta gagaaaatgc 721 caattgaaac ccccaaacca cttaaaataa agaaaggtgg tttcaagaag aaatggaaca 781 agaggaaatt catgaagaag gatggtcaag ctgttgtgga aaaggatgaa gctagagtgg 841 ctggagatgc tcacgattct gacgtcctaa tgcagccaac agtaataaca caggaggcat 901 cttgtggcac tctgttcctt caaccttgtg aggaagctaa aagagtagaa gctgagccac 961 ctagagatat tgaaatggta caacctgata aggagaacca acacagtgac gctgcattgg 1021 tgcaacctga tgatgaagct agagtagaac aggagccatc cagagatatt tcagtggtgc 1081 cacctaatga ggaagctata agtgttaagc aggaaccatc catcgatgct gcaattctgc 1141 aacctaaaga ggaagcttca agtgtaaagc aggagccatt catcgatact gcaatgctgc 1201 aagcttgtaa ggaagctgga agtgtagaac ttgggccagc cagagatact gtaatttctc 1261 aacttaatga gcaagatagg ggtgtaaagc aggagccagc tggtgacact gcagtgccac 1321 aacctgacgt ggacgctagg gtcgtaaagg aggagtcacc aagaacggaa cctaatgggg 1381 aagctacgaa catgaaggag acaccaaaga actctgcagt gtgtaattct ccagagacaa 1441 aggaatttgg agatattaca gcaatgggtt cagatcctcc cgcaactaat atgagcgaag 1501 aataagctgt ggttgttgaa tcaaaatgca atagctttag tgtgttcacc tgcagagggc 1561 gaagaataag ctgcggttgt tgaatcaaaa tgcaatagcc ttagtgtgtt cacctgcaga 1621 ggtgtgaaac atgaatggct ggcttttcca gtttaaaagg aggcagctgg aataggaaga 1681 tgtatgtggg ctgagaatag ttagttcata tttgtcattg ttagctaggc atgtgtatgc 1741 ctaatgatat gaatgaaatg tattacctgc tgctttagtg agcactactt tgaaaagaag 1801 gggaaaaaat gaattcgagg tttctgatc //