LOCUS AK063944 2221 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-123-E08, full insert
sequence.
ACCESSION AK063944
VERSION AK063944.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2221)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2221
/clone="001-123-E08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 429..2057
/db_xref="Osa1:LOC_Os05g05160"
/note="(Rice Genome Annotation Project) extracellular
signal-regulated kinase 1, putative, expressed"
/note="mapping to R05-TIGRv4S1-000133F (Chr.5: short
arm=2489654, long arm=2495634, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88926.1"
/translation="MDFFTEYGEGNRYKIEEVIGKGSYGVVCSALDTHTGDKVAIKKI
NDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLH
QVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGL
ARVAFSDTPTAIFWTDYIATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPL
FPGKNVVHQLDIITDLLGTPSPETISRIRNEKARRYLNSMRRKKPIPFTQKFPNADPL
AMRLLERMLAFDPKDRPSAEEALADPYFKNIANVDREPSAQPITKLEFEFERRRITKE
DIRELIYREILEYHPKMLREFLEGTESTGFMYPSAVDHFKKQFAYLEEHYAKGSTAAP
PERQHNSLPRPCVVYSDNRPQSTASVTEDLSRCLIRDNNLKSQDSASVGASRIPQGAA
ARPGKAVGSVLRYGNCSTSAAEQQYEQRRVVRNPAIAPNSSVPLGSSYPRRNQTCKSE
TGDVERIDSSQTGPPKPYVANKLPATVDGRSGHW"
BASE COUNT 598 a 504 c 498 g 621 t
ORIGIN
1 cacaacgatc tctctctcca gtctcgactc cccagctacc acctcctctc ctctcctctc
61 tcctccatga gctttgccta gatcacagct ggatttcttg gccgcatcct cctcttcttc
121 caggtctctt ccagctagct agcttgttct tcccttccct ttctttttgc cttgtgcgcg
181 tgaggatcag tgagctgtgc ggctctcttt tcttgttctt gctggactgc tgctgcctta
241 aaagatcctg cctttcttgc tcactttccc cggaggagag agagaggaga tccacatctc
301 tgatggttct tgggatctcc taggagttgt ttctacctgt gctgctgctg ctgatttctt
361 cttcgatttg ctagcggctg tgtggtcgga gctcgtcttc ttggttcgag atctcgacac
421 cttctgagat ggattttttc accgagtacg gtgagggaaa caggtacaag atagaagagg
481 ttataggaaa agggagttat ggtgtggttt gctctgcttt ggacactcac accggtgata
541 aagttgctat caagaaaatc aatgacatct ttgagcatgt gtccgatgca acacggatac
601 ttcgcgagat caagttgctt agactcctgc gacatccgga tatcgtggaa attaagcata
661 ttctacttcc tccatcaagg agagaattca aggatatcta cgttgttttt gaactcatgg
721 agtctgattt gcaccaagtt ataaaggcca acgatgactt gactcctgaa cactaccagt
781 ttttcttgta tcagttgctc cgaggactga aatatataca cacagcaaat gtatttcatc
841 gagatctcaa accaaaaaat atcttggcga atgctgattg taagctcaaa atatgtgatt
901 tcggccttgc aagggtagct tttagtgata ctccaaccgc catcttctgg acggattata
961 ttgcaacaag gtggtaccga gcaccagagc tgtgtggatc ttttttctcc aagtatacac
1021 cagcaataga tatatggagt attggctgca tatttgccga gcttttaacc ggaaaacctc
1081 ttttccctgg gaagaatgtg gttcatcaac ttgatataat tacagatcta ctaggaacac
1141 cttctccaga aacaatatct aggattagaa atgagaaggc aagacgttac ttgaacagta
1201 tgaggcggaa aaaacctata ccatttacac agaagttccc aaatgcagat ccacttgcaa
1261 tgcggttgtt agagagaatg ttagcttttg atccaaaaga tcggccaagt gctgaggagg
1321 cgcttgctga tccttatttc aagaacatag ccaatgttga tagagagcct tctgctcaac
1381 ctatcacaaa gctagagttt gagttcgaga ggcggagaat tactaaggaa gatataaggg
1441 aactcatata tagagaaatt ctggagtatc atccaaagat gctgagggag ttccttgagg
1501 gaactgagtc cactggtttc atgtacccaa gtgcagtaga ccattttaaa aaacagtttg
1561 cataccttga agaacattat gccaagggat caacagcagc tccacctgag agacaacata
1621 actcattacc aaggccttgt gttgtctatt cagataaccg gccacaaagc acagccagtg
1681 tcactgagga tctttccagg tgtttaatca gagacaacaa tctaaaatca caggattctg
1741 cttcagtcgg tgcaagcaga atccctcaag gtgctgctgc aagacctggt aaagcagttg
1801 gttcggtgct gcgttacggt aactgttcga catccgctgc tgagcaacaa tatgagcagc
1861 gaagggttgt tcggaaccca gcaattgctc caaacagcag tgttcctctg gggagctcat
1921 accccagaag aaaccagacc tgcaagagtg aaacaggtga tgttgaaagg atcgattcca
1981 gccaaaccgg tccaccgaag ccatatgtgg cgaacaaact gcctgctacc gtcgatggtc
2041 ggagtggcca ctggtaaatt tctgcagcgc accagcgaaa acgctagtta ttaccacagc
2101 atcagcatgg gtttattgtt ctatgtagta aattcttaga catttaaaac atgtcattct
2161 gtacagactt gtattgtttc ttgggggctt ttccatgata aaaacagtag aattgtactg
2221 c
//