LOCUS AK063759 1942 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-121-A10, full insert
sequence.
ACCESSION AK063759
VERSION AK063759.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1942)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1942
/clone="001-121-A10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1942
/db_xref="Osa1:LOC_Os04g46940"
/note="(Rice Genome Annotation Project)
copper-transporting ATPase 3, putative, expressed"
/note="mapping to R04-TIGRv4S1-000848F (Chr.4: short
arm=27613968, long arm=27616440, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 510 a 404 c 534 g 494 t
ORIGIN
1 ttgaaactag ttcaatgctc atatcgttta tccttcttgg aaagtacctt gagatcttgg
61 caaaagggaa gacctctgag gctattgcca agcttatgga tcttgcacca gaaactgcaa
121 ctatgttgat atatgatcat gaagggaatg ttgtgggcga gaaggaaatt gacagtaggt
181 tgattcagaa aaatgatgtg atcaaagtag tcccaggtgg gaaagttgct tctgatggct
241 ttgttatatg gggacagagc catgtgaatg aaagcatgat caccggagaa tcacgacctg
301 tggcaaagag gaagggtgac actgtcatag gagggacggt gaatgagaat ggtgtgcttc
361 atgtccgtgc aacatttgtt ggatcagaga gtgcccttgc acagattgta cggctagtag
421 agtcagcgca aatggcaaaa gctcctgtac aaaagtttgc tgatcagata tctagagtct
481 ttgttcccct ggtcatcatt ctttctttgc ttacttggct tgcttggttc ttagctggga
541 ggcttcatgg ttaccctaac tcatggatac catcttccat ggatagcttt caactagctc
601 tccaattcgg gatatcagtt atggttattg catgcccttg cgccttaggg cttgcaactc
661 caacagctgt gatggttgct actggagttg gtgcctcaca aggagttctt atcaagggtg
721 ggcaagctct ggagagtgca cagaaggtcg actgcatcgt tttcgacaag acagggacac
781 taaccattgg gaagcctgtt gtggtcaaca caagactgtt aaaaaacatg gtcttgcgtg
841 aattctatgc ttacgttgca gcagcagagg tcaacagtga gcacccactg ggtaaggcag
901 tcgtggagca tgccaagaag ttccattcgg aagagagcca tgtctggact gaagcaaggg
961 atttcatttc agtgacaggg cacggtgtca aggcaaaaat aagtggcagg gctgttatgg
1021 tgggaaacaa gagctttatg ttgacttcag gcattgatat cccggtgaaa gctttggaaa
1081 tcctaacgga agaagaggag aaggcccaaa cagcgatcat tgtggctatg gatcaagaag
1141 tcgtgggcat tatctctgta tctgatccaa taaaaccaaa tgcccgcgaa gtgatttcgt
1201 atctcaaatc tatgaaggtg gagagtataa tggtgactgg ggacaactgg gggactgcca
1261 atgccattag caaagaggtt ggcattgaga acacagttgc agaagcgaaa ccagagcaga
1321 aagctgagaa ggtgaaagaa cttcagtcgg ccggaaggac cgtggcaatg gttggtgatg
1381 gaatcaacga ttctccagcg cttgtatcag ccgacgttgg cctggcgatt ggcgcaggca
1441 ctgacgtcgc cattgaagcg gccgacatcg tcctcatgaa gagcaacctg gaagacgtga
1501 tcaccgccat cgatctgtcc agaaaaacct tcttccgcat acggatgaac tacgtctggg
1561 cgctcggcta caacatcatc ggcataccga tcgctgccgg ggtgctcttc ccgtcgaccc
1621 ggttccgctt gccgccatgg gtcgccggcg ctgcgatggc tgcttcctcc gttagcgtcg
1681 tctgctggtc cctgctgttg aggtactaca agagcccaaa actgggccgt tgatcatgca
1741 gtacacacgc atagcatttg cttagaataa gaggtgtaga tatctgttga caatgtgcta
1801 atgtggttct aaaagaaatg tgctagtgtg tgttgtgtgg cacctgaaat gtgtacatta
1861 cctacgtata tatgcaccgt gtgtttacaa gtgttaaata tggagcactt tgccaacact
1921 agcaggtgat acgttgtagt gc
//