LOCUS AK063536 1950 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-117-B11, full insert
sequence.
ACCESSION AK063536
VERSION AK063536.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1950)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1950
/clone="001-117-B11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1950
/db_xref="Osa1:LOC_Os05g43820"
/note="(Rice Genome Annotation Project) rac-like
GTP-binding protein 2, putative, expressed"
/note="mapping to R05-TIGRv4S1-000913F (Chr.5: short
arm=25393024, long arm=25394976, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 604 a 378 c 378 g 590 t
ORIGIN
1 aacacaacag gtacaaaact gcaaacaatg gattcaatcg attagttctt tgtcatagtt
61 tgaagagttc cttgctatat atatactgta gcaattcaag ttggacagac tgttgcttta
121 atgaaccatt tatgttgagc tgataatgtt gttggccatg gtagaacatc aaggccgtgt
181 ttgatactgc catcaaggtg gtccttcagc ctcctcggag aaggggggag acgacgatgg
241 caaggaagaa gacaaggcga agcaccggct gctcgttaaa gtaagagcac acctcaaaag
301 ccttagaatt acatggttgg atcttgtgag ttgtgatcat ggactagcta ttataatgtt
361 tgtgcctagt aaacatgagt gcgcatcatt ttctactttg tgaatgaaat agtatgaatt
421 atgcaatggc tgatgtaact gttttttttt tttttactgc aggaacttga tgtgtggcag
481 tgcatgtgtt gtttaggacc tgtctgaatt cttgaaggtg tgtaagcgtt gtgtaatggc
541 aagtgaattt gctgactgtt ctgctgcttc catttactac tactaagctc tttcgtgtgt
601 ttgaattact acatctagaa ctagagcatc aggctcatag actgacttca tatcaggtgt
661 ttgtatcatt aatattatta tgtaagaagg ttgtggtttg tggaacaact aaatacaaca
721 atgcaggcta tgttgtagta tgctctgcta ctggtgtatg ttataaatat aaaattctgc
781 tacatacttt tgtgcatcga gtcgcctttt cttcttgttt cttgcacaat ggcagatatc
841 atttttttgg tcagtttaaa aacgagaaac gcttataacc tttttcaaaa caaggccaga
901 aactatgatt gagattataa tgacatcgtt tgacacacca cagtgcccac aaggctgttc
961 aaactacgag ctgtttattc tgtatttctg gcaacactaa tgaaaccaga gaaaacgctt
1021 ctggatttct gcatcagcta tgcgatgaaa ccctttgaaa tcagagcacc tgcttcattt
1081 tgtaaacatg cttttgagct tctcgttggc ggataccagt tcggcagcaa caccaacctc
1141 gttagcggag tgtcctgcat ctggaaccat ctgtatacgg tagaagagat taattattga
1201 ctcaatcaag tacgcatgaa caatattgca gtcggcagta agcacattct atctacacag
1261 aaatcattcg aaatgcattt tatctagcga agtcagtaga tcagggtata taaatttaag
1321 gtatacggta atttgccaaa ataaccgttg ctcattgcca aaaacaatga gcaggcaacc
1381 taaatgagca gattactgta ctcctatttg acacagttat tttggcaatc atttacatga
1441 aaagaatcat ttaccttaaa ttctgcttca ggccatgctt tatgaagatc ccaggcagac
1501 atcataggac agcaaacatc ataccggccc tgcaacataa aaacaccgat cactatcagg
1561 tactacaata gtatcatctc acctgtataa ctctttgcac aaaacttaca aaatactcca
1621 ctttacagta ggagtagtag ctataaaaag catcaaggcc taatttgcca gtcgagggaa
1681 caattatgaa taatgccact ttacagttcc attgtcatta tgcattgcat tacagcacac
1741 aaaatccatg tcttcttggc atcctacatc tacatgctag atcaaacatt tggacacgac
1801 aatcaacatc aaatcagagg agctacagct aatctccaac atgagaattc gatcatgttt
1861 gctacaatct attatattat taaaacagct ttgaaagaag gcaccacgtt cgctggaggc
1921 tagaaattct cacattaatc agagaaaaag
//