LOCUS AK063536 1950 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-117-B11, full insert sequence. ACCESSION AK063536 VERSION AK063536.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1950) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1950 /clone="001-117-B11" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1950 /db_xref="Osa1:LOC_Os05g43820" /note="(Rice Genome Annotation Project) rac-like GTP-binding protein 2, putative, expressed" /note="mapping to R05-TIGRv4S1-000913F (Chr.5: short arm=25393024, long arm=25394976, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 604 a 378 c 378 g 590 t ORIGIN 1 aacacaacag gtacaaaact gcaaacaatg gattcaatcg attagttctt tgtcatagtt 61 tgaagagttc cttgctatat atatactgta gcaattcaag ttggacagac tgttgcttta 121 atgaaccatt tatgttgagc tgataatgtt gttggccatg gtagaacatc aaggccgtgt 181 ttgatactgc catcaaggtg gtccttcagc ctcctcggag aaggggggag acgacgatgg 241 caaggaagaa gacaaggcga agcaccggct gctcgttaaa gtaagagcac acctcaaaag 301 ccttagaatt acatggttgg atcttgtgag ttgtgatcat ggactagcta ttataatgtt 361 tgtgcctagt aaacatgagt gcgcatcatt ttctactttg tgaatgaaat agtatgaatt 421 atgcaatggc tgatgtaact gttttttttt tttttactgc aggaacttga tgtgtggcag 481 tgcatgtgtt gtttaggacc tgtctgaatt cttgaaggtg tgtaagcgtt gtgtaatggc 541 aagtgaattt gctgactgtt ctgctgcttc catttactac tactaagctc tttcgtgtgt 601 ttgaattact acatctagaa ctagagcatc aggctcatag actgacttca tatcaggtgt 661 ttgtatcatt aatattatta tgtaagaagg ttgtggtttg tggaacaact aaatacaaca 721 atgcaggcta tgttgtagta tgctctgcta ctggtgtatg ttataaatat aaaattctgc 781 tacatacttt tgtgcatcga gtcgcctttt cttcttgttt cttgcacaat ggcagatatc 841 atttttttgg tcagtttaaa aacgagaaac gcttataacc tttttcaaaa caaggccaga 901 aactatgatt gagattataa tgacatcgtt tgacacacca cagtgcccac aaggctgttc 961 aaactacgag ctgtttattc tgtatttctg gcaacactaa tgaaaccaga gaaaacgctt 1021 ctggatttct gcatcagcta tgcgatgaaa ccctttgaaa tcagagcacc tgcttcattt 1081 tgtaaacatg cttttgagct tctcgttggc ggataccagt tcggcagcaa caccaacctc 1141 gttagcggag tgtcctgcat ctggaaccat ctgtatacgg tagaagagat taattattga 1201 ctcaatcaag tacgcatgaa caatattgca gtcggcagta agcacattct atctacacag 1261 aaatcattcg aaatgcattt tatctagcga agtcagtaga tcagggtata taaatttaag 1321 gtatacggta atttgccaaa ataaccgttg ctcattgcca aaaacaatga gcaggcaacc 1381 taaatgagca gattactgta ctcctatttg acacagttat tttggcaatc atttacatga 1441 aaagaatcat ttaccttaaa ttctgcttca ggccatgctt tatgaagatc ccaggcagac 1501 atcataggac agcaaacatc ataccggccc tgcaacataa aaacaccgat cactatcagg 1561 tactacaata gtatcatctc acctgtataa ctctttgcac aaaacttaca aaatactcca 1621 ctttacagta ggagtagtag ctataaaaag catcaaggcc taatttgcca gtcgagggaa 1681 caattatgaa taatgccact ttacagttcc attgtcatta tgcattgcat tacagcacac 1741 aaaatccatg tcttcttggc atcctacatc tacatgctag atcaaacatt tggacacgac 1801 aatcaacatc aaatcagagg agctacagct aatctccaac atgagaattc gatcatgttt 1861 gctacaatct attatattat taaaacagct ttgaaagaag gcaccacgtt cgctggaggc 1921 tagaaattct cacattaatc agagaaaaag //