LOCUS AK063515 2418 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-116-G07, full insert
sequence.
ACCESSION AK063515
VERSION AK063515.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2418)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2418
/clone="001-116-G07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2418
/db_xref="Osa1:LOC_Os08g44840"
/note="(Rice Genome Annotation Project) acyltransferase,
putative, expressed"
/note="mapping to R08-TIGRv4S1-000932R (Chr.8: short
arm=28030128, long arm=28032380, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 488 a 772 c 565 g 593 t
ORIGIN
1 atcagcaacc aaagcaagaa gcaattcttg agctcaatca gcaacaacat ctatctcctt
61 cttgcttagt taagtccttc gccctcccaa gaagaagaag atgtcttgct gcggcggcaa
121 ctgcggctgc ggcagcggcc accaccaaga ccttcgtcct cgctgccccg ccgtcgccag
181 tggtcaccgt cacctccacc cgcaccgtcg ccccagccgc cgccaagtgc gtcctcgcca
241 cattcgacct cccctacatc accttctact acaaccagaa gctgctcctc taccgcctcc
301 ccaacggcgc ctccgacttc cccgacgccg tcgcccgcat gtccgcctcc ctctccgacg
361 ccctcgccta cttctacccg ctcgccggcc gcatccgcca ggacgaccac gacggctccc
421 tctccatcca cggccaacac ggcgccgagg tcatcgaggc ctccgccgac catgtctccg
481 tcgaccaact cgccggagag gagtgctcgg aggaggcgga gaaggtgatg cagctcctcg
541 tcccctacac cggcgtcatg aacctcgagg gcctgaaccg cccgctgctc gccgtccagg
601 tacctacatt actatttatt actaacattt ctccaatttt aattatttat atatcctttt
661 gatatgatgc ctcaacataa tgattattta gacatttttc tcaggactta attaattcac
721 acataattta ctttaatttc cttctggaac taaactactt taatctagta cagtatgtaa
781 gtatatgtgt tgtgtatttt ttttagtctc taggagaccg taaacctgaa cggtatgtat
841 gcacgtacgt acttttgatg agtattagtt gtatagtaca tagtacacta ctagctgtag
901 cagtacgtac atacggtggt acaatattgt attgatgagc tgaaaattga agggtggcat
961 ggaatggaat gggccttacc tgcagtatct gtatgtgcag gctgattaat taaccagcca
1021 accaccaaca ctgtccaaat ttattactat acggagtact agtatatatt acaaacaaat
1081 ttaattaggt actctgatgg aattgacgcg gtgcatgcag ttgacacgtc tgcgggacgg
1141 ggtggcagtg gggtgcgcct tcaaccacgc cgtcctcgac ggcacctcca cctggcactt
1201 catgacgtca tgggcggagc tctgccgggg cggcggcgcg ccgtcgctgc tgccggtgca
1261 caaccgcggc atggcgcgct ccgtccgcgt caacctcccg ctcccggcgt ccgccgaggc
1321 gcacgagaag accgacccca atgggcccaa ggtgcccctc gtggcccgcg tcttctcctt
1381 cccgccctcc gccgtggccc gcgccaaggc cgccgccaac gccgccctgc cccccggcgc
1441 caagcccttc tcctccttcc agtcgctcgc cgcccacatc tggcgcgccg tctcccgcgc
1501 ccgcgccctc ggcccctccg acatcaccgt cttcgccgtc ttcgccgact gccgcgcccg
1561 cctcagcccg cccctcccgc ccgcctactt cggcaacctc atccaggccg tcttcaccgg
1621 cgtgcccgcg gggatgctcc tcgctggccc gcccgagctc gccgcggggc tgctgcagaa
1681 ggccatcgac gaccacgacg ccgccgccat cacccggagg ctggaggagt acgaggcggc
1741 gcccaagctg ttccactaca gcgacgccgg ccccaactgc gtcgccgtcg gcagctcgcc
1801 gcgcttcagg gtgtacgacg tcgacttcgg cttcggccgc ccggagcggg tgcgaagcgg
1861 cgccaacaac aagttcgacg ggatggtcta cctctacccg ggccgcggcg gcgacggcgg
1921 catcgacgtc gagctctcgc tgcagccgga gccgatgcag aggttggaca aggaccaaga
1981 cttcctccaa atgcgagccc cttaattctt tttttttttt cttttatact cctatatatt
2041 atgatgattc atcagctgca tgttactccc tagtagtctt gttcctccta aattgcaact
2101 tctcctacta ctcctttatg tttagttgga tgcatgcatg gattccttgt tgcttgctac
2161 tatttatata tagtggagta ctatgttgtg tactatgttg cttgcaagct acatttatat
2221 gtggatttgc atatattgaa ttggtccatt acttaaataa ggatcggata tggaattaat
2281 tagcagctat acagtttgtg tgtacttaat tattaagccc atgcatcata tctggcctgt
2341 tgcttgattg gaaatgtaac ctattaatgt atttgtaatt tttgtactcc aatgattact
2401 ggaattgctt acatgttt
//