LOCUS AK063482 2694 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-116-B11, full insert
sequence.
ACCESSION AK063482
VERSION AK063482.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2694)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2694
/clone="001-116-B11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 474..2516
/db_xref="Osa1:LOC_Os05g04330"
/note="(Rice Genome Annotation Project) DNA
methyltransferase DMT106, putative, expressed"
/note="mapping to R05-TIGRv4S1-000107F (Chr.5: short
arm=1943619, long arm=1951723, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88726.1"
/translation="MVKVEDDVEGSGINASVGDLRDAAVNPQPALLRATVKEEEGQPS
SSSSHVRSQFIGMGFSPMLVDRVLQKHGDRDSDTILEALLSQSALQKSGSESGSLGDL
FDSDNEENSSHFAPRKEVIQDIKVEADSSSEKRSYLLSTMNFSQREVDLALNQLGEEA
SLEQLVDFIVTGQVSGCSGGNENGDASNEVKDESLFGVMDKTLHLLQMGFTEEEVSSV
IDKAGPEATVLELADTIFARRIASSIEQKEVKVEPDFLDETETSYSAYHPSNSGLRYY
DDDHDNIRIKRAKHMFIDDSAGSSSRAGNQPNLDPWLKDHRATTSDGSVKEEFDAMTP
GIRRNVRSDVANPPYFLYGNVVEIPKATWRQLSEFLYNVEPEFVNSQFFSALSRKEGY
IHNLPTEGRRNLVPRSPMTIEEAFPFTRQCWPSWDTRKQLNSVATEVAGIEQLCERLG
KMVRDSGGYLSQEKKTHIMHQCKLANLIWVGPDRLSPLDPQQVERILGYPRKHTNLFG
LNPQDRIEAMRYSFQTDTLGYLLSVLKDLYPDGLRVLSIYSGIGGAAIALHRLGIPLQ
CVVSVDQSDTNRKILRRWWSNTEQKGQLRQINTIWKLKINVLEDLVKEFGGFDIIIGG
NFSSCKGGTTVNSSMGMDSNQFFEYVRVVQRVKHIMGRLQVRAHESARHRHRSPSN"
BASE COUNT 718 a 610 c 693 g 673 t
ORIGIN
1 gcgcatcttc ccccttttgg aatcgcccgg tccccatctc cacttcgaac caaacccgga
61 ggcgcgccgc gcgcctcccc gccgccgccg tcgagcggga ggggatcgga gcgcgcggcc
121 gccgccgtcg ccgagtccgt ccgacctccg tcccccgcgc caacgcagca gcagagcagc
181 agtgtgggaa ggaagaaggg aagccgctgc cgcgagcggc gagcgggagt gggggtttct
241 ccattgttac catttcaggc cagccgccgt cgacgccgag gcggggtggg ccccacctgt
301 cactggccat gttcgcctct atatatatac accgcgccgc cccccttccg ccgccaacct
361 gagccgagcg gggagacgcg tcttcctcct cctcctcctc cattgctgct ccccctcccc
421 cttcctccta caggggcatg cgattttgga agcggagttg atacttgatc gagatggtta
481 aagtagaaga tgatgtggag ggcagtggca tcaacgcttc tgttggtgat ctcagggatg
541 ctgctgtcaa tccacagcct gccctgctgc gtgctactgt taaggaggag gaaggacagc
601 caagctcttc ctccagtcat gtaagatcac aatttattgg catggggttt tcaccaatgt
661 tggttgacag ggtgcttcag aaacacggtg acagagattc agatactata ctggaggctc
721 ttttgtcaca gtctgctctt caaaaatctg ggtctgaatc aggttcattg ggagatctct
781 ttgattctga taatgaagaa aatagttctc attttgcgcc taggaaagaa gttatccaag
841 acattaaggt tgaagctgat tcatcctcag aaaagagatc atatctactg agtacaatga
901 acttctcgca gcgagaagtt gatttggcac tcaaccagct aggtgaggaa gcatcattgg
961 aacagcttgt agatttcatt gttactggtc aagtgtcagg ttgctctgga ggaaacgaaa
1021 atggagatgc ttcaaatgag gtaaaggatg aatcactgtt tggagtaatg gataaaacac
1081 tacatttact ccagatgggt tttacggagg aagaagtgtc atctgtcatt gacaaagctg
1141 gtccagaagc aacagttttg gagctggctg acaccatttt tgcacgtaga attgccagta
1201 gcattgagca gaaagaggtg aaagttgagc ctgactttct agatgagaca gaaaccagct
1261 attcagcata ccatccctca aattctggtc taaggtacta tgatgacgac catgacaaca
1321 taaggattaa aagggctaag catatgttta tagatgacag tgcgggttcc agtagtcgtg
1381 ctggaaatca acctaactta gatccatggc ttaaggatca ccgtgccaca actagtgatg
1441 ggtctgtcaa ggaagaattt gatgcaatga caccaggcat ccgtagaaat gttcgcagtg
1501 atgtcgccaa tcccccatat ttcttatatg gaaatgttgt agaaattccc aaagctacat
1561 ggcgtcagct gtcagagttc ttatataatg tggagccaga gtttgtaaat agccagtttt
1621 tctcggctct ctcacgaaag gagggttaca ttcataacct tccaacagag ggaaggcgta
1681 acctggttcc taggtcacca atgactatcg aagaagcatt cccattcaca aggcagtgct
1741 ggccatcgtg ggacacaaga aaacaactta acagtgttgc tacagaagtt gcaggaatag
1801 agcagctgtg tgagagactg ggaaagatgg taagagactc aggaggttat ctttcacaag
1861 aaaagaaaac gcacatcatg caccagtgca agctggctaa cctcatctgg gttggcccag
1921 ataggttaag tcctttggat ccacaacaag tggaacggat acttggctac ccacggaaac
1981 acacaaacct gtttggcctg aatccacaag atagaataga agccatgagg tacagtttcc
2041 agactgacac actcggctat cttttgtcag tcctgaagga cctgtatcca gatgggctaa
2101 gggtgctatc aatctacagt ggaattggag gtgcagcaat tgccctccat cgcctaggga
2161 taccactaca gtgtgtagta tctgttgacc aatctgatac gaacaggaaa attttgagaa
2221 ggtggtggag taatactgaa caaaaggggc aactgaggca gataaatacc atttggaagc
2281 tgaagattaa tgtacttgag gacctggtga aagaatttgg tggttttgac ataattattg
2341 gtggaaactt cagttcctgt aaaggtggta caacagtaaa ctcatccatg ggcatggatt
2401 ccaaccagtt ttttgagtat gttcgtgttg ttcaaagagt gaagcatata atgggtcggc
2461 tccaggtgag ggcgcatgaa tctgctcgac atcgacatcg ctctccatca aattgacttg
2521 tctggccttg taggatggtg tagcattagc atagcatcat gtggatctgt aggtgatgtg
2581 tcatggagca gttgctctca gacaacttta aatgttatgt tgatctccgc agaaacattg
2641 cgatggctgt tagcattcgt tacattgcat taattaccct ttcatgttcc tggt
//