LOCUS AK063458 2206 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-115-G09, full insert sequence. ACCESSION AK063458 VERSION AK063458.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2206) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2206 /clone="001-115-G09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2206 /db_xref="Osa1:LOC_Os05g12150" /db_xref="RAP-DB:Os05g0212300" /note="(RAP Annotation release2) Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4)" /note="(Rice Genome Annotation Project) endoglucanase 1 precursor, putative, expressed" /note="mapping to R05-TIGRv4S1-000307R (Chr.5: short arm=6921209, long arm=6923907, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 421 a 662 c 714 g 409 t ORIGIN 1 aagccaacca aagtcctctg ctcccctgct ccttcactct gcttcactct cactcactca 61 ccttcttggt acattgcaat tttgcaatgg ccaagaatgg tggtgctcac ggtgcagcca 121 cattgtttgg tctcttggca cttgcatcaa tggtgaagct gggatttgtt gctgggggtg 181 gccatgacta tgccatggca ttgaggaaga gcatcctcta cttccaggcg cagcggtccg 241 gcgttctccc tcctaaccag agggtctcct ggagagccag ctctggcctc tttgatggaa 301 aggccaatgg agttgatctt gttggaggtt attatgatgc aggggacaat gtcaagtttg 361 ggttgccaat ggcgttcacg gtgaccatga tgtcgtggag catattagag tacggcaagc 421 agatggcggc ggccggcgag ctccggaacg ccatggacgc cgtcaagtgg ggcaccgact 481 acttcatcaa ggcgcacccg gagcccgacg tgctctacgg cgaggtcggc gacggcgaca 541 ccgaccacag ctgctggcag cggccggagg acatgacgac gagccgccag gcgttccgcg 601 tcgaccccca gcaccccggg tcagacctcg ccgccgagac cgccgccgcc atggccgccg 661 cgtccatcgt cttccgcggc acgtaccctg gctacgccaa cctcctcctt gtgcactcca 721 agcagctgtt cgagttcgcc gacaagtacc ggggcaagta cgacgccagc atcacggtgg 781 cgcgaaacta ctacggctcc ttcagcggat acggggacga gctgctctgg gcggcggcgt 841 ggctgttcga ggcgacggag gacaggtcct acctggagta cctcgccggc aacggcgagg 901 cgctgggcgg gacggggtgg tccatcaacc agttcgagtg ggacgtcaag taccccggcg 961 tgcaggtcct cgccgccaag ttcctcctcc agggccgcgc cggcgaccac gccgccgcgc 1021 tgcagaggta caggcagaac gcggagttct ttgtgtgctc ctgcgtcggc aagggcgccg 1081 tcaacgtcgc caggaccccc ggcggcatga tgtaccacca gaggtggaac aacctccagt 1141 tcgtcaccag cgcctccttc ctcctcaccg tctacgccga cttcgccgcc atctccggcc 1201 gcggcgccgt ccactgcccc gccggcgccg cccaaccatt cgacatcctc aaattcgtca 1261 aatctcaggt gaattatatt ttgggtgata atccgagggg gacgagctac atggtcgggt 1321 acggcgcgag ctacccgcgg caggtgcacc accgcggcgc gtccatcgtg tccatcaaga 1381 gggacccgtc gttcgtgagc tgccaggagg ggtactcgtc gtggtacggg agggaagccg 1441 gcaacccgaa cctgctcgac ggcgccgtcg tcggcgggcc cgacgagtac gacgacttcg 1501 ccgacgagcg cgacaactac gagcagacgg aggccgccac ctacaacaac gcgccgctgc 1561 tcggcgtcct cgcccgcctc gccgcctcct gcggcggcct caaggaggag gaatacgaac 1621 aagaaacggc gactccggtc gtgaaccgga cgtcgtcgtc gtcgtcgctg ccggcgacgg 1681 cgacggcgat cgggatcgag cagaacgtga cggggacgtg ggcgaggagg cggaggacgt 1741 actaccggta cgcggtgacg gtgacgaaca ggtcgcgggg gaagacggtg agggagctgc 1801 acctgggcgt gtcggggctc cgggggcggc tgtgggggct ggaggaggcg aggtacgggt 1861 acgtgccgcc gaggtggctg ccggcgctgc ggccggggag gagcctcagg ttcgtgtacg 1921 tgcagccggc gccggcgccg gcgaacatct gggtcaccgg ctacaaactg gtctgaaatg 1981 aactcaagta ctcaactatt ctgaaatggt aatttgtggt agagagagag tagagtgtgg 2041 ttatttggag gaagtagaga agagtccaag gaacgcgagt acgtatactc atcctcttcc 2101 tcctcgaata ctatgatttt aggggtttgg agagatgaga tttagttgtt catcgtcctc 2161 cttttgccct atcaagttta attaagtaac tattaatatg cgactg //