LOCUS AK063430 2667 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-115-D09, full insert
sequence.
ACCESSION AK063430
VERSION AK063430.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2667)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2667
/clone="001-115-D09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 111..2423
/db_xref="Osa1:LOC_Os05g39850"
/db_xref="RAP-DB:Os05g0476200"
/note="(RAP Annotation release2) Similar to DNA
replication licensing factor MCM3 homolog (Replication
origin activator) (ROA protein) (Fragment)"
/note="(Rice Genome Annotation Project) DNA replication
licensing factor MCM3, putative, expressed"
/note="mapping to R05-TIGRv4S1-000810F (Chr.5: short
arm=23336420, long arm=23341380, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88698.1"
/translation="MDVNEEAMAAHKRAFLDFLDQDVGKGVYMQAVRDMVQNKRHRLI
IGMDDLRNHSLDLARRVIRSPAEYMQPASDAVTEVARNLDPKFLKEGQRVLVGFSGPF
GFHRVTPRDLMSSFIGTMVCVEGIVTKCSLVRPKVVKSVHYCPATGGTLSREYRDITS
FVGLPTGSVYPTRDENGNLLVTEYGMCEYKDHQTLSMQEVPENSAPGQLPRTVDIIVE
DDLVDSCKPGDRVSIVGVYKALPGKSKGSVSGVFRTVLIANNVSLMNKEANAPVYTRE
DLKRMKEISRRNDTFDLLGNSLAPSIYGHLWIKKAVVLLMLGGVEKNLKNGTHLRGDI
NMMMVGDPSVAKSQLLRAVMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGA
MVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVIAAANPI
YGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRQISEHVARMHRYCTDDGG
ARSLDKTGYAEEDDGDVNAAIFVKYDRMLHGQDRRRGKKSKQDRLTVKFLKKYIHYAK
NLIQPRLTDEASDHIATSYAELRDGGANAKSGGGTLPITARTLETIIRLSTAHAKMKL
RHEVLKTDVEAALQVLNFAIYHKELTEMEEREQREMEMKQQADHDAGASGGNADEHRS
SGNDPMDVDVGNASNDQDVPAERIEAFEAILGQHVLANHLDQISIDEIEQTVNREAAA
PYNRRQVEFILERMQDANRIMIRDGIVRII"
BASE COUNT 751 a 553 c 678 g 685 t
ORIGIN
1 aaaaaaaaaa atccgaaccc gccgccacaa tcccccgccc attcccggct tcccgctcct
61 ctctctctcc ctcccctccg gtcgcgcgtc ccgtctccgg agcagcagcc atggacgtca
121 acgaggaggc aatggcggcg cacaagcgcg cgttcctcga cttcctcgac caggatgtcg
181 ggaagggggt gtacatgcag gccgtgcgcg acatggtgca gaacaagcgc caccggctca
241 tcatcggcat ggacgacctc cggaaccaca gcctcgatct cgcccgcagg gtgatacgga
301 gccccgcgga gtacatgcag ccggcgtcgg acgcggtgac ggaggtggcg aggaacctgg
361 accccaagtt cttgaaggaa gggcagcgcg tgctggtggg attctcgggg cccttcggct
421 tccacagggt cacgcccagg gacctcatgt cgtccttcat cgggactatg gtctgcgtcg
481 agggcatcgt cacgaaatgt tcactagtaa ggccgaaagt tgttaagagt gttcactatt
541 gccctgctac tggaggtact ctctcacgtg aatacaggga catcacatct ttcgtaggcc
601 tacctactgg ttcggtttat ccaacaaggg atgaaaatgg taacttgttg gtcactgagt
661 acgggatgtg tgaatacaag gatcaccaaa cactctccat gcaagaagtg cctgaaaatt
721 ctgcccctgg acagctccca agaacagtgg acattattgt agaagatgac ctagtagatt
781 cttgcaagcc aggtgaccga gtatcaattg ttggtgttta caaggctctt ccagggaaaa
841 gcaagggcag tgttagtggt gtgttcagga ctgtccttat tgcaaacaat gtttcactta
901 tgaacaaaga agcaaatgca cctgtctata ctcgggagga tttgaagagg atgaaagaaa
961 tatcaaggag aaatgacaca tttgacttac taggaaattc acttgctcca tctatatatg
1021 gccatctgtg gataaagaaa gcagtagttc tattaatgct tggtggtgta gagaagaatc
1081 tgaagaatgg aactcacttg agaggagata taaacatgat gatggtagga gatccttcag
1141 ttgccaagtc ccagctccta agagcggtta tgaacattgc ccctttggct atttcaacta
1201 ctggaagggg ttcatctggt gttggtttga ccgctgctgt cacttctgat caagagactg
1261 gtgagagaag gctggaggct ggtgccatgg ttcttgctga tcgtggtgtt gtctgcattg
1321 atgagtttga taagatgaat gatcaggacc gagtggctat tcatgaagtt atggaacagc
1381 aaactgtgac gattgcaaag gcaggaattc atgcgtcact aaatgcgaga tgtagtgtga
1441 ttgctgcagc aaatccaata tatggaactt atgaccgttc attgacacca accaagaaca
1501 ttgggcttcc agattcatta ctctcacgtt ttgatttgct ttttattgtt cttgatcaaa
1561 tggatcctga gattgatcgt caaatttctg aacatgttgc acggatgcat agatattgca
1621 ctgatgatgg aggagcaaga tctcttgata aaacaggata tgctgaagaa gatgatggtg
1681 atgttaatgc agccatattt gttaaatatg atagaatgct ccatgggcag gacagaagga
1741 gaggcaagaa atccaaacag gacagactga ctgtcaaatt cctgaagaaa tatattcatt
1801 atgcaaagaa ccttattcag ccaagactaa ctgatgaggc atctgatcat attgcaactt
1861 catatgctga gctcagggat ggtggtgcaa atgcaaagtc tggtggaggt acacttccga
1921 tcacagcgag gacactggaa accataattc gtctatctac tgctcatgcc aagatgaaat
1981 tgagacatga ggttctaaaa actgacgttg aagctgcact gcaagttctg aattttgcaa
2041 tataccacaa agagttaact gagatggaag agcgtgaaca gagagagatg gaaatgaaac
2101 aacaagctga tcatgatgca ggtgcaagtg gtggtaatgc agatgagcat agaagttctg
2161 gaaacgaccc aatggatgtg gatgtaggaa atgcatcgaa tgatcaggat gttcctgcgg
2221 agagaattga agcatttgag gcgattcttg gtcagcatgt gttggcaaat catctcgatc
2281 aaatatcaat tgacgaaatt gagcaaactg ttaatagaga ggcagctgca ccttacaata
2341 gacgtcaagt agaattcatt ttggagagga tgcaagatgc aaacaggata atgatacgag
2401 atggcatcgt tcggataatc taacttcaaa aatcatgtct tgcattgtgg acaagctgat
2461 tactgtgcat catccttgtc tttttcatct gatacttagc cagtttggca ttgcagaatg
2521 tctgcatctg caccggaggt tgatgtaccc gtgtatctta atttttaaca gcgagattta
2581 tgatgatcat ctgtgtcttt gtactttaaa ttcatgtacc gtaacgtaac aattctcctg
2641 atctagtgat atgtagtccc tgatttt
//