LOCUS AK063389 1771 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-114-G12, full insert
sequence.
ACCESSION AK063389
VERSION AK063389.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1771)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1771
/clone="001-114-G12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1771
/db_xref="Osa1:LOC_Os08g12430"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R08-TIGRv4S1-000256R (Chr.8: short
arm=7335090, long arm=7336861, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 529 a 320 c 429 g 493 t
ORIGIN
1 ttaagagcag tacaacgcgc atatatatac cttgttcttg gcaactcttg agcccactag
61 atggttataa taattactta acaagatatc aatttattaa ctactaacag ggagtcaggg
121 atgcagggga ggggcaggga gtaaaacaga gcagtagagg aaggagttta gtagatgaaa
181 tgtagaggag agagaggaaa gaccacaaca tagtactctc tccgtcccta aatatttgac
241 gccgttgact ttttgaaata tgtttgacag ttagtcttat tcaaaaaatt taagtaatta
301 ttaattcttt tcctatcatt gattcattgt taaatatact actactactc aagtttttga
361 ataatattca caaaagtttt tgaataagac gaatggtcaa acatgtttaa aaaagtcaac
421 ggcgtcaaat atttagggac aaagggagtg gcaaaagagg gagaagagta cataggatgt
481 agaagagggg ggaggaaaca ccaaaacaga gcagcagagg aaggataaga gcagagcaga
541 ggaaggtgca aagcaggatc acgtagagca gagaaagaaa cagaggaaag tagagggtgg
601 agggaagaga aagaagagca tgcccgctta gtttttgtgt caatggagga ccaggatgat
661 ggcgcaggtg ccgaggacca ggatgatggc gcaggcacag gataggcaca tgtgacagct
721 gggattgccg ctagggatgg agaagtcacc agggatggat cgccatcgcc acagcctcag
781 gctccagcga ccctctttct gttgttttct ccctgatttg gtgggatttg gtgcgtgggg
841 accttttcac ccctaagatt ggcgcttctg ttagttctgt ttcgtgccca gggccgcacc
901 aatttttttg ggcccttcaa ccaatcgcgg caaaaactgc gccttcaact tcctctggcg
961 tcgcctttaa ccgttgtagc acctaaggac gtgatatcga cgtcatagcg acgccttggg
1021 cataaggcgg acgccataaa caatatggta aggcgggcta gacgcagtga ctcctggcac
1081 tggcagcgcc ttacctccat agcgacgcta tggcgacgcc ttgacactta attttggatt
1141 ttttttaact gtagtacaaa atacaagtta ttataaaatc ccaactaaat tgattgagtt
1201 aaattgggtt ttggttgact tacgaagtta tggtcatcca ttggattgtt gccaggtagt
1261 cagctgattg tgtatatgac tcaactatac attttgtttg ttggtatcag tatatgatac
1321 tatcacttat tgtgtccttt agatgtcaat ctgcattttt actctgtccg ttgcagcaca
1381 cttacttttc tttctttatt tgtatatact catctctatt gaatccttgc tagatggtat
1441 ttgctatagg cctggacctc attattctat tttccaggat ttttcatgga cccgggaaaa
1501 cacaatggaa tgagtctgaa ggacagaaga gaattagtat atgaagtttc acaatggcca
1561 caaggtgcct ctgagatttt acaatgttgg actcgcagag atcttcttga gcttatctgt
1621 gctgagttgg gcaaggagag gaaatacact aatgttccaa aatctaaaat gattgcttat
1681 ctgttaaaat tagttttacg aaagaatgga cagccaaagg atgataatgc aaatgcttca
1741 attttggggc agaataacaa agatgacaca g
//