LOCUS AK063332 1349 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-114-A03, full insert
sequence.
ACCESSION AK063332
VERSION AK063332.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1349)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1349
/clone="001-114-A03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 30..1253
/db_xref="Osa1:LOC_Os06g36520"
/db_xref="RAP-DB:Os06g0560700"
/note="(RAP Annotation release2) Lipolytic enzyme,
G-D-S-L family protein"
/note="(Rice Genome Annotation Project) anther-specific
proline-rich protein APG precursor, putative, expressed"
/note="mapping to R06-TIGRv4S1-000699F (Chr.6: short
arm=21446776, long arm=21449996, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88652.1"
/translation="MAKLVGATLYLYLFLFLLLLHLHCHQCKPAAAASFVVHGGGGAT
ARAAAVRAVFVFGSSLVDNGNNNHLNGSGAVRADYAPYGVDFPLGATGRFSNGRNVID
ALGELLRLPAAGLLPPFADPATRGRAALHGVNFASGGSGILDLTGKNKGEVLSLKQQI
TNFEAVTLPDLRAHLQGATTATTTTGHKMKGQDFFDQCYLPKSLFIIGTGGNDYLLNY
FNAGSGPTRAPLSEFTSSLLTKLSNHLQRLYDLGARKFVLFSIQPLGCTPVVRTFLNA
TSDACIEPMNHAALLFNSGLRSIVKNHNGGVRSHMPAASFVYVNSYKIISDIIQHPAK
YGIRKTSRACCEVSRGGVLCQKGGAICSDRTKYAFFDGLHPTDVVNARLARKAYGSNS
PDKVYPINVKKLAML"
BASE COUNT 295 a 424 c 349 g 281 t
ORIGIN
1 acattatcta gctcatcagc ttgccggcca tggccaagct cgtcggagca actctctacc
61 tctacctctt cctcttcctc ctgctgctgc atctccattg ccaccaatgc aaacctgctg
121 ctgctgcgag cttcgtcgtc catggcggcg gcggagcaac ggcaagggcg gcggcggtga
181 gggcggtgtt cgtgttcggg agctcgttgg tggacaacgg caacaacaac cacctgaacg
241 gctccggcgc cgtgcgcgcc gactacgcgc cctacggcgt cgacttcccg ctgggcgcca
301 ccggccgctt ctccaacggc cgcaacgtca tcgacgccct cggggagctc ctccgcctcc
361 ccgccgccgg cctcctcccg cctttcgccg accccgccac ccgcggccgc gccgccctcc
421 acggcgtcaa cttcgcctcc ggcggctccg gcatcctcga cctcaccggc aagaacaagg
481 gagaggtctt gagcctaaag cagcagatca ccaactttga ggcagtgaca ctccctgacc
541 tgcgggccca cctgcaggga gcaaccacag ccaccaccac caccggacac aagatgaagg
601 gccaggattt ctttgaccag tgttacctgc ccaagagcct gtttatcatt gggacaggtg
661 gcaatgacta cttgctcaac tacttcaacg ctggtagtgg gcccacaagg gcccccttgt
721 cagagttcac aagctcactc ctcaccaagc tctcaaacca cctgcagaga ttgtatgatc
781 taggggcaag gaagtttgtg ctattctcca tccaacccct gggttgcacc cctgtggtga
841 ggaccttcct caacgctacc agtgatgctt gcattgagcc gatgaaccat gcggcgctcc
901 tcttcaactc tgggctaaga tctatcgtta aaaatcacaa tggtggcgtg aggtcacaca
961 tgcccgccgc gagcttcgtc tacgtcaatt cctacaagat cattagcgat ataatacagc
1021 acccggcaaa atatggcatc aggaaaacga gtcgagcttg ctgtgaggtg tcgaggggag
1081 gcgtgctgtg tcagaagggg ggggccatct gcagtgacag gaccaagtac gccttcttcg
1141 atgggctcca cccgacagac gtggtgaatg ccaggctggc acgcaaggcg tacggctcca
1201 actcgccgga caaagtctac cctatcaatg ttaagaagtt ggcaatgctg tagcagtagt
1261 aataattaat catctctaat tgtaattaag tcatacttaa ttagtattac tagctagtag
1321 ttgtgaaatg gataattagc tctagtgac
//