LOCUS AK062582 2274 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-100-C11, full insert
sequence.
ACCESSION AK062582
VERSION AK062582.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2274)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2274
/clone="001-100-C11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2274
/db_xref="Osa1:LOC_Os04g54830"
/db_xref="RAP-DB:Os04g0640900"
/note="(RAP Annotation release2) Lambda repressor-like,
DNA-binding domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R04-TIGRv4S1-001103F (Chr.4: short
arm=32387308, long arm=32389582, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 598 a 469 c 631 g 576 t
ORIGIN
1 gtttatacta tatgcttcct ttatggtgaa gttataaagc tgggattctg atggtttgac
61 gaaagctctt ggtccccaaa caatactaaa ctcctttttc tgtcacatct taccgtattt
121 atattaagaa ggatggacct taatatgaca aatctttggt ttcatgggaa ggaacatata
181 gctgcttcgc cattcccaca agttgcaaca tcaatgaact tcacttgcct tggcagctca
241 aaaacaatcg agacttctaa aaaaatgttt cagcagagcg atcaaagctt gtctattcct
301 gatgatggat gcaggcttgt ccttggactt ggaccaacac ctaatctaca ttatgctgat
361 aatgagtcat ccggtggcaa cagggataaa gaatctgcaa atttgttcag ccaacatttt
421 gccatagccg atcatggtct gatgttgggc atttcgagag gcggcacaag aaattttcaa
481 gccacaacaa tgatcgagaa gtattcacat caaaatagaa atggtatcgt cttcccactt
541 actgatgaag gatcaacttc agctaaaagg aaaccaggtg gttatgtgct gccacttctg
601 tttgctccaa gatcagatga tatctgtccc aatggaacac caccagtgac cgatattcaa
661 catgttgaaa ctgtagatga ttgtgacgat gatcacatta cgtctcttaa tcagcagaag
721 gttcagatta gccccgagcc ttcagcaaca actgattgtt cttttgctgc aacttcagat
781 atgatattct cctcaactag cacggagcag agaagtcacc aacgacatcc taagaagtgt
841 aggttcaatg ggtgttcaaa aggagcaaga ggggcaacag ggctctgcat ttcccatggt
901 ggtggtcagc ggtgtcaaaa gcctggttgc aacaaaggtg ccgagagccg aacagcttac
961 tgcaaatctc atggtggagg gaaacggtgt caggagctag gctgcaccaa aagtgctgaa
1021 gggaagactg agttctgcat tgctcatggt ggtgggcgtc gatgcggaac tccggggtgt
1081 acgaaggcag caaggggaag atcaggattt tgcataaaac atggtggagg gaagagatgc
1141 agggtagagg gatgcagcag gagtgccgaa ggacagtttg ggttgtgcat ctcacatgga
1201 ggtggtcgcc ggtgtcagta cccgaactgc agtaagggag cacaaggagg caccatgttt
1261 tgcaagtccc atggtggagg caaacggtgt atatttgaag gctgtactaa aggtgccgag
1321 ggcaacacgc tgctatgtaa agggcacggt ggtggtaaga ggtgcctctt tgagggaggt
1381 ggtgtctgtc ctaaaagtgt tcatggtgga actagcttct gcgtcgctca tggaggcggc
1441 aaacgctgtt ctgtaccagg atgtaccaag agcgcccgtg gtcgcactga ttgctgcgtg
1501 aggcatggtg gtggcaagcg ttgcaaggtt gacggttgcg acaagagtgc tcaggggagc
1561 acggacttct gcaaggcgca tggaggcggc aaacgatgcg cttggagcac cggctgtgag
1621 aggtttgcaa ggggaaggag tgggttatgt gctgcacatg gaaccctgat ggcttcaaag
1681 caagtgcctg aatctgagca cagcagaggc atgatcagga acagcctctt cagcaagatg
1741 gtctctgcat cctcgatgac ggctggtgct agcatggatc atgccatctc ttcttctctc
1801 cctggtgcct cgtcggatcg cggtgagtcc ttggaagaga tgcggaacgg caagctcctg
1861 ataccgcatc aggtcctggt tcctggttca atgaggccat cttcttcgca tggcaaaggt
1921 caagagaacg gagggagcca ggagcagcag tgcttcgggt tcgtcgtgcc ggaggggagg
1981 gttcatggtg ggggcctgat gtccatactt ggagctagag gcaatcttga cgatccgagg
2041 gactgaattt tgctgaaaat gttaaagttg cagctatttt tatgctgtca tttatgattt
2101 ctgcatctag aatccataag atttcagatc accattgcac tatgctgtca agcatgactg
2161 cttgatcgaa attgagttct gaattatgtg gcttaggcct tgtataaagt attttgtcat
2221 tcatatggca cttacataca caaagagcag aatacctgaa gagctgtttg attg
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