LOCUS AK062098 1781 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-045-A02, full insert
sequence.
ACCESSION AK062098
VERSION AK062098.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1781)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1781
/clone="001-045-A02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1781
/db_xref="Osa1:LOC_Os06g02380"
/note="(Rice Genome Annotation Project) ruBisCO large
subunit-binding protein subunit beta, chloroplast,
putative, expressed"
/note="mapping to R06-TIGRv4S1-000041R (Chr.6: short
arm=810064, long arm=814115, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 511 a 302 c 510 g 458 t
ORIGIN
1 cttgttggag ttacactggg accaaaggga aggaatgttg ttttggagag caagtatggg
61 tcccctagga ttgtcaatga tggtgttaca gttgcaagag aggttgaact ggaggatcct
121 gttgaaaata ttggagctaa gttggttagg caagcagcag caaagaccaa tgatttagct
181 ggagatggca caactacttc tgttgtgctt gctcaggggc tgattgctga gggtgttaag
241 gtcgttgcag ctggtgccaa tcctgtgcaa attacacgtg gtatcgagaa aactgcgaaa
301 gcactagttg aagagctaaa gaaattgtca aaggaggttg aagacagtga gcttgcggat
361 gttgctgcag tcagtgctgg caacaattat gaaatcggta atatgatagc agaggctatg
421 agcaaggttg gcaggaaggg tgtggttacc cttgaagaag ggagaagttc tgagaataat
481 ctctatgttg tggagggaat gcagtttgaa cgtggttata tctccccgta ttttgtaact
541 gacagcgaga aaatgtctgc agaatatgag aactgcaagc ttcttttggt ggacaaaaaa
601 atcaccaacg caagggatct tatcaatgtt ttggaggagg ccataagagg tgcataccca
661 attctgataa ttgctgagga tattgagcag gaggctcttg ctactcttgt tgtcaacaag
721 cttagagggt cattgaaaat tgccgctatc aaagcccctg gttttggtga gcgcaagacc
781 cagtacttgg atgatattgc cattctaact ggagcaactg taatcaggga tgaagttggg
841 ctgtcacttg acaaggcaga caaatcagtt ttaggaacgg ctgcaaaggt ggtccttaac
901 aaagagtcaa caacaattgt tggtgatggc agtacacagg aagaagtgac taagagggtt
961 gcacaaataa aaaatctcat cgaggctgcc gaacaagaat acgagaagga aaagctcaat
1021 gagaggattg caaagcttgc tggtggtgtt gcagtcattc aggtgggagc acaaacagag
1081 accgaactaa aagagaagaa gttgagagtt gaggatgccc taaatgctac caaggctgct
1141 gttgaggaag gtattgttgt tggtggaggg tgcactcttc tgagactggc agctagagtt
1201 gacgccatca aggacaacct ggagaatgat gagcagaagg ttggagctga aattgtaagg
1261 agagcgctga gctacccgct taaattgatt gctaagaatg ctggtgttaa tggaagcgtt
1321 gttaccgaga aggttctctc taacgataac ttcaagtttg gttacaatgc tgcaactgga
1381 cagtacgagg atttgatggc tgctggtatc attgacccca ctaaggtggt gagatgttgt
1441 cttgagcatg ctgcgtcggt ggccaagaca ttcctcacat cggatgtcgt cgtcgtcgag
1501 atcaaggagc ctgagcctgc gcccgtcacc aacccgatgg acaactccgg ctacgggtac
1561 tgatgactaa gttacagtta cttgttctcc gggaaggtca ctggccgtca atttttgggt
1621 agtaggcttg aatctgaatt ttggtgagat ttgagtagtt tcgagacaat ttgatttgtt
1681 cccatgggaa gtgaaataaa cagggtcact atagcaaaat ttgtggtgta actggaacgg
1741 ctgtcaaatt acgaaggaag atatttgaaa gatttcatgc t
//