LOCUS AK061976 1655 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-043-A03, full insert
sequence.
ACCESSION AK061976
VERSION AK061976.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1655)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1655
/clone="001-043-A03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 196..1281
/db_xref="Osa1:LOC_Os01g62840"
/note="(Rice Genome Annotation Project)
mannose-1-phosphate guanyltransferase, putative,
expressed"
/note="mapping to R01-TIGRv4S1-001673F (Chr.1: short
arm=36722448, long arm=36724880, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG88187.1"
/translation="MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEV
GVTEVVLAINYRPEVMLNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSG
EPFFVLNSDVISEYPFAELIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKF
VEKPKIFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWM
DVGQPRDYITGLRLYLDSLRKRSTNRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIG
PGCVVEDGVRLSRCTVMRGVHIKKHACISNSIIGWHSTVGQWARIENMTILGEDVHVG
DEVYTNGGVVLPHKEIKSSILKPEIVM"
BASE COUNT 434 a 360 c 410 g 451 t
ORIGIN
1 agcgcagcac aaagccctcc tccttccacc gcagctgcgc tacctacctc caagagggct
61 ggtccgctgg tcgtggagaa ggaagagaga tcttccaggc tgatccctcc tattgctttc
121 tccttcccga gcccgcttga ggatccccgc cggagtaggg attagggagg ggagaacagg
181 aggcggcgat tcaccatgaa ggcgctcatt cttgttggag gcttcggcac tcgccttcgg
241 cctttgacgc tcagtttccc aaagcctctt gttgatttcg cgaacaagcc catgattctg
301 catcagattg aggccttgaa agaagttgga gtaacagaag ttgttttagc catcaactac
361 cgaccggagg taatgctcaa tttcctgaag gactttgagg ataagcttgg catcacaatc
421 acgtgttccc aagagactga gcccttggga actgctggcc ctcttgctct agcaagggac
481 aagcttgtgg atggatctgg tgagccattc tttgtcctca acagtgacgt cataagtgaa
541 tacccttttg ctgagctcat aaaatttcac aagagccatg gtggtgaggc aacgattatg
601 gtcaccaagg tggacgaacc atcaaaatat ggtgttgtgg ttatggagga ggtcactgga
661 atggtggaaa aatttgttga gaaaccaaaa atatttgtag gcaacaagat caatgcggga
721 atttacttgt tgaatccatc tgtcctggac cgcatcgagc tgaagccaac ttcaattgag
781 aaagaggtct ttcctcgaat tgcatctgat gcaaagctct ttgctctggt ccttccaggt
841 ttttggatgg atgttggcca accaagggat tacattacag gcttgcgcct ttatctggat
901 tcacttagga agagatcaac caacaggtta gccactggag cacacattgt tgggaatgtg
961 ctagttcacg agagtgccaa gattggcgaa ggctgtctga ttggtcctga tgttgctatc
1021 ggtcctggat gcgtcgtgga ggatggtgtg aggctttccc gttgcacggt gatgcgtggc
1081 gtgcacatta agaagcatgc ttgcatatca aacagcatta ttggatggca ctcaactgtt
1141 ggacaatggg cacggataga aaatatgact atcctgggag aggacgtaca tgtaggtgat
1201 gaggtctata ccaacggcgg tgttgttctc ccgcacaaag agatcaagtc aagcatcctg
1261 aagcctgaga ttgtcatgtg aactaaccct ccttttatgt tatggtatac tcaagttctt
1321 ttaatgcagt atctttagtt tatacctgtg atccttccaa gatgttgacc tagcatgtgt
1381 gttactcaca ttctgaaaac tgcttctcaa tgagaattca gtgtgccata tttgattgta
1441 ccttcatttg gaccatccag taaagttctc aaccctgcac caagaggacc agaagaaact
1501 ctttttccta taaaagaaga ggatcagcct tgtactttgt tctttttgaa acaaatatat
1561 actgctatat ggaacagacc catgatgtat tgcacaattt gtagcaaatg atgcaaagtg
1621 gataataata aggatcaggc agatccatat aaact
//