LOCUS AK061803 1609 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-039-H12, full insert
sequence.
ACCESSION AK061803
VERSION AK061803.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1609)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1609
/clone="001-039-H12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1609
/db_xref="Osa1:LOC_Os02g51070"
/note="(Rice Genome Annotation Project) soluble starch
synthase 2-2, chloroplast precursor, putative, expressed"
/note="mapping to R02-TIGRv4S1-001364R (Chr.2: short
arm=31227480, long arm=31230168, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 309 a 434 c 528 g 338 t
ORIGIN
1 ttttgtgttt ctagaggccc ctccctttcg acaccggcac aatgatattt atggaggaga
61 aagatttgat gttttgaagc gtatgatttt gttctgcaaa gctgctgttg aggttccttg
121 gtttgctcca tgtggtggtt ccatctacgg tgatggcaat ttagtcttca ttgcaaatga
181 ttggcatact gcacttttac ccgtatattt gaaggcatat taccgagata atggcttgat
241 gcagtatact cgctctgttc ttgtgataca caacattgct catcagggtc gtggccctgt
301 agatgacttc gccacgatgg acttgcccga gcactacatc gatcatttca gactgtacga
361 ccccgtcggc ggtgagcaca gcaacgtgtt cgccgctggc ctgaagatgg ctgaccgcgc
421 ggtcaccgtc agccatggct atctgtggga gatcaagaca atggacggtg gctggggcct
481 ccacgagata ataaaccaca acgactggaa gctgcagggc atcgtgaacg gcatcgacat
541 ggccgaatgg aaccccgagg tggacgagca cctgcagtcc gacggctacg ccaactacac
601 gttcgagacg ctggacaccg gcaagaaaca gtgcaaggag gcgctgcagc ggcagctggg
661 cctgcaggtc cgcgacgacg tgccgctgat cgggttcatc gggcggctcg accaccagaa
721 gggcgtggac atcatcggcg acgcgatgcc gtggatcgcc gggcaggacg tgcaggtggt
781 gatgctgggc acggggcggc cggacctgga ggagatgctg cggcggttcg agtcggagca
841 caacgacaag gtgcgcgggt gggtggggtt ctcggtgcag ctggcgcacc ggatcacggc
901 gggcgccgac gtcctcctga tgccgtcgcg gttcgagccg tgcgggctga accagctgta
961 cgccatggcg tacggcaccg tgcccgtggt gcacgccgtg ggcgggctcc gcgacacggt
1021 ggcgccgttc gacccgttcg ccgacacggg gctcgggtgg acgttcgacc gcgccgaggc
1081 gaaccggatg atcgacgcgc tcgggcactg cctcaacacg taccggaact acaaggagag
1141 ctggaggggg ctccaggcgc gcggcatggc gcaggacctc agctgggacc acgccgccga
1201 gctctacgag gacgtcctcg tcaaggccaa gtaccagtgg tgagctggtg gtatttttcg
1261 cgacgcctct ggatcccgcc gtggatgggc gcgctttttc tctagggcgg ctctgcgtcg
1321 gagacgctca gacgcatcgc gcgcgttcgc gcccacacga tgactggcac gctgctgctg
1381 agacggcggc acgcgatgcc atcatgccac cggacggtag gagcaacggt ggaagtgaac
1441 tgtactactg gtgctacact gctactacat gagatctgct cttattggtc acgtactcac
1501 gttcacgctg aattaccgaa tgtgttgtgt cttgtgtgtg tgtgttaaag gcattgtcct
1561 ggtaaatggt ggagacgaga tggccgggtc gcgggagtta tatttgtat
//