LOCUS AK061716 1668 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence. ACCESSION AK061716 VERSION AK061716.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1668) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1668 /clone="001-037-H07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 572..1429 /db_xref="Osa1:LOC_Os01g09550" /db_xref="RAP-DB:Os01g0191300" /note="(RAP Annotation release2) No apical meristem (NAM) protein domain containing protein" /note="(Rice Genome Annotation Project) ANAC075, putative, expressed" /note="mapping to R01-TIGRv4S1-000297R (Chr.1: short arm=4876710, long arm=4882642, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG88063.1" /translation="MVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEK EGELVVCKIFYQTQPRQCSWSSDRGGGAAATASAVTTAAVQQDQQRRRDSGSGSCSST RDHEVSATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGDQVHSNQLG RSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVSNIVPPAMQHASVVLDHDQF HVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGEASIPHSQETEWPYQPYW TPDNQDHHG" BASE COUNT 431 a 460 c 475 g 302 t ORIGIN 1 gtttgctctt ctactgctca tcctcctcct ctactactcg tcctctttgc tctattcaca 61 gctagcaaca agaaggaggc ttacacatgc atgtgcacgg tctctgccgg acgcatatga 121 atcaggcatg aatagggggc acatcagcag ctcggagctc atcgacgcca agctcgagga 181 acgccggatc tccacggcca agcactgccc cagctgcggc aacaagctcg actgcaaacc 241 ggattgggtg gggctaccgg caggagtcaa gttcgatccg acggaccagg agttgatcga 301 gcacctcgag gccaaagtga gggaagaagg ctcaagatct catcctctca tcgatgagtt 361 catacccacg atagaagggg aggacggcat atgctacacc caccctgaga aacttccagg 421 tgtgacaagg gacggcctga gcaagcactt cttccaccgg ccgtcgaagg cgtacacgac 481 ggggacgagg aagcggcgga agatccagac ggagtgcgac gtgcagaagg gggagacgag 541 gtggcacaag accggcaaga cccggccggt gatggtgagc ggccggcaga aggggtgcaa 601 gaagatactg gtcctctaca ccaacttcgg caagcaccgc aagccggaga agaccaactg 661 ggtgatgcac cagtaccacc tcggcgacct cgaggaggag aaggaagggg agctcgtcgt 721 ctgcaagatc ttctaccaga cgcagcctcg gcagtgcagc tggtcctccg accgcggcgg 781 cggcgccgcc gccaccgcat ccgccgtgac gacggcggcg gtgcagcagg atcagcagcg 841 caggagggac agcggcagcg gcagctgctc gtcgacgagg gaccacgagg tgtcggcgac 901 gtcctactcg acggccgggt acgccgtcgc cgccgccgtc gagatgcagc atttgaagca 961 tgccgccgac catttcagct tcgcgccttt caggaagagt ttcgaggagg ttggtataag 1021 tggtgatcag gtacactcca atcagcttgg gaggtcggag cagcagcatg ctggccagga 1081 acaacagccg caccggccgt tgcttgcaac cacgacggcg gtgcctgcca cggccttcct 1141 gatcagccgg ccgacgaacc ctgtatcaaa tatagtgcca ccagcaatgc agcatgcatc 1201 tgtcgttctt gatcatgatc agttccacgt gccagcaatc cttctccacc acgacaaatt 1261 tcagcagcag caacaaaagc ttgacaggag gtctgccggc ttggaggaac tgataatggg 1321 ctgcacgtct tcgagcacaa aaggagaagc ttcaattcct cactcccaag agacagaatg 1381 gccttaccag ccatactgga ctcctgacaa ccaggatcat catggatagt agcaacaagg 1441 ctggtaaata gtgaagatca ataccaaaag aaaactaacc acattctctt tcaccttgtg 1501 tggtctctgt cttcttgaat atacaacatt gctttcttga agaatgtatg tactacggtt 1561 gggagaagaa atagattaaa gagatctgta tagatctgcc tccatgaaaa aagggagatc 1621 aaattaactg tgcaaggaca ctccaagata gaagagacaa agttgttg //