LOCUS AK061688 1582 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-037-B05, full insert
sequence.
ACCESSION AK061688
VERSION AK061688.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1582)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1582
/clone="001-037-B05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1582
/db_xref="Osa1:LOC_Os03g59340"
/note="(Rice Genome Annotation Project) CESA2 - cellulose
synthase, expressed"
/note="mapping to R03-TIGRv4S1-001620R (Chr.3: short
arm=33719312, long arm=33721412, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 384 a 331 c 365 g 502 t
ORIGIN
1 gatatagagg aagggattga aggttctgga tttgatgatg agaaatcact actgatgtct
61 caaatgagct tagagaaaag atttggtcaa tctagtgttt ttgtagcctc cactctgatg
121 gaatatggtg gtgttcctca atccgcaact ccagaatctc ttctgaaaga ggccatacat
181 gttatcagct gtggctatga agacaaaagt gactggggaa ctgagattgg atggatctat
241 ggttctgtta cagaagatat tctcactgga ttcaagatgc atgcacgtgg ctggcggtca
301 atctactgca tgcctaagcg accagcattc aaggggtctg ccccaattaa tctttcggat
361 cgtctgaacc aggtgcttcg gtgggctctt ggttctgtgg aaattctttt tagcaggcat
421 tgtcccatat ggtatgggta cggaggacgg cttaagttcc tggagagatt tgcttacatc
481 aacaccacta tttatccact cacatcgatt ccactcctct tgtactgcat attgccagct
541 atctgtcttc tcactgggaa gttcatcata ccagagatta gcaactttgc gagtatttgg
601 tttatctctc tctttctgtc aatctttgct actggtatcc ttgagatgag gtggagtggt
661 gttggcatcg atgaatggtg gaggaatgag cagttttggg ttattggagg tatttccgct
721 catctatttg cggtcttcca gggtctgctg aaggtgcttg ctggaattga taccagcttc
781 actgtcacct caaaggcctc tgatgaagaa ggcgatttcg ctgagctcta catgttcaag
841 tggacaaccc ttctgatccc accgaccact attttgatca tcaacctggt cggtgttgtt
901 gctggtatct cctacgctat caacagtggc taccagtcat ggggtccgct ctttgggaag
961 ctcttctttg ccttctgggt gattgtccac ctgtacccct tccttaaggg tctcatgggt
1021 cggcagaacc gtacaccgac cattgttgtt gtttgggcca tcctccttgc atcgatcttc
1081 tccttgctgt gggttcgtat cgatccattc accacccgtg tcacaggccc tgatacccaa
1141 aaatgtggta tcaactgcta ggagtgagca agatagtagg caaagaatcg ccagtttgct
1201 atccattctg ttgtgtaagt tattagtgga tgactctata tagtctactg taagatctta
1261 gctgccggaa tgcttgttat gtattaagga gtagtaagtg gtaccttgct gttcatctgt
1321 tgataattaa gttagtagaa ctactttgct gaaaaatgcc tgacaacatt ctgctgcact
1381 taatgggaat atgaaatcaa tgttgctctg tatgaaagaa tttacatgta tataacttga
1441 atcaatttaa caaatacact ctgtagcctt gtaggcacac tgcattgcag gttcctggta
1501 gaaaccccaa tgagtgtatg cacaatgtat gcataaatat gactgattcc ttctgaattt
1561 ttttatacac actttataca gt
//