LOCUS AK061425 1133 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:006-306-G05, full insert
sequence.
ACCESSION AK061425
VERSION AK061425.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1133)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1133
/clone="006-306-G05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 93..890
/db_xref="Osa1:LOC_Os03g16950"
/db_xref="RAP-DB:Os03g0277600"
/note="(RAP Annotation release2) Similar to (clone
wusl1032) mRNA sequence"
/note="(Rice Genome Annotation Project) serine/threonine
kinase-like protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-000549R (Chr.3: short
arm=9400749, long arm=9401976, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG87917.1"
/translation="MAFSSKACRCLVLMSFALLPLSMAMDSIGSYCSGNSLAGNSKAV
ASINSVLTDLVAKGSTGGGFATSSAGKANNVIYGLAQCRGDVSTSDCQACLASAANQI
LTSCNYQSDSRIWYDYCFMRFENENFIGQTDTDAGVILVNVQAMDNGKAFQKAVGKVM
GKATSQASQAGSGGLGRTKDQYTPFINIYGLAQCTQDLSPLACAQCLSTAVSRFGQYC
GAQQGCQINYSSCRVRYEIYPFYFPLATSARSATTDMTKYTKIVVHR"
BASE COUNT 281 a 306 c 305 g 241 t
ORIGIN
1 gaacccaagc cccccacaca cacttctaac tagctaggtg tgatacacag cagtgacagt
61 gagagtgaga gtgagcttga gtgatcatag ccatggcatt cagtagcaaa gcttgccgtt
121 gcttggtgct catgtcattt gccttgctcc cactgagcat ggccatggac tccattggca
181 gctactgttc agggaacagc ttggccggca acagcaaggc cgtggcaagc atcaactccg
241 tcctcaccga cctcgtcgcc aagggctcca ccggcggcgg cttcgccacg tcctccgccg
301 ggaaagccaa caacgtcatc tacggtctcg cgcaatgccg cggcgacgtc tccaccagcg
361 actgccaggc ctgcctcgcc tccgccgcca accagatcct caccagctgc aactaccaat
421 ccgactcaag aatatggtat gactactgct tcatgcggtt cgagaacgag aacttcatcg
481 ggcagacgga cacagatgcc ggggtgattc ttgtgaacgt gcaggcgatg gataacggca
541 aggcgttcca gaaggcggta gggaaggtta tgggcaaggc aacgtcgcag gcatcacagg
601 ctgggagtgg tgggctgggt aggacgaagg atcagtacac gccgttcatc aacatctacg
661 ggctggcaca gtgcacacag gacttgtcac cgctggcttg cgcacagtgt ctgtcaacgg
721 cggtgtcaag gttcggtcaa tactgcggcg cacaacaggg atgtcagatt aactacagta
781 gctgcagggt gcgctacgag atctatccct tctacttccc gctcgccacc agcgcacgca
841 gcgccaccac tgacatgacc aagtacacca agatcgttgt gcaccgctaa gcatccatgg
901 ttagttgcac gtacatggtg atgtgcgcat gcaaaagttg caaacacatc acgtacgtac
961 gtattaatgt tcaacgtatt atgtgtctgt ggatgtttca gcgtgcagtg gatgaataat
1021 caaggctata aaatgtagcc ttagcatgtt ataactggga ataaagatgt gagtactagc
1081 taagcaatgt acgcgcacat tcgtgtggag taataatatt agagttttta acc
//