LOCUS AK061277 1404 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:006-212-F01, full insert
sequence.
ACCESSION AK061277
VERSION AK061277.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1404)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1404
/clone="006-212-F01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 63..1247
/db_xref="Osa1:LOC_Os10g39260"
/db_xref="RAP-DB:Os10g0537800"
/note="(RAP Annotation release2) Peptidase A1, pepsin
family protein"
/note="(Rice Genome Annotation Project) aspartic
proteinase nepenthesin-1 precursor, putative, expressed"
/note="mapping to R10-TIGRv4S1-000664F (Chr.10: short
arm=20627200, long arm=20628604, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG87831.1"
/translation="MGRPVATLLVLCFISVTARAAAFRVHGRLLADAATEGGAVVPIH
WTQAMNYVANFTIGTPPQPASAVIDLAGELVWTQCKQCGRCFEQGTPLFDPTASNTYR
AEPCGTPLCESIPSDVRNCSGNVCAYEASTNAGDTGGKVGTDTFAVGTAKASLAFGCV
VASDIDTMGGPSGIVGLGRTPWSLVTQTGVAAFSYCLAPHDAGKNSALFLGSSAKLAG
GGKAASTPFVNISGNGNDLSNYYKVQLEGLKAGDAMIPLPPSGSTVLLDTFSPISFLV
DGAYQAVKKAVTVAVGAPPMATPVEPFDLCFPKSGASGAAPDLVFTFRGGAAMTVPAT
NYLLDYKNGTVCLAMLSSARLNSTTELSLLGSLQQENIHFLFDLDKETLSFEPADCTK
LS"
BASE COUNT 251 a 474 c 426 g 253 t
ORIGIN
1 aatcaagcat caatccctca ttagcatcgc tggttgatac taaactaaca gtagccataa
61 tcatgggaag gccagtggca acgctgctgg tgctgtgctt catctctgtc acggcgcgcg
121 ccgccgcgtt ccgcgtgcac ggccgcctcc tcgccgacgc cgcgacggag ggaggcgccg
181 tcgtgcccat ccactggacc caggcaatga actacgtcgc gaacttcacc atcggcacgc
241 cgccgcagcc ggcgtcggcg gtcatcgacc tcgccgggga gctcgtctgg acgcagtgca
301 agcagtgcgg ccgctgcttc gagcagggca cgccactgtt cgacccgacc gcgtcgaaca
361 cctaccgggc ggagccgtgc ggcaccccgc tctgcgagtc catcccgagc gacgtccgca
421 actgctccgg caacgtgtgc gcgtacgagg cgtccaccaa tgccggggac accggcggca
481 aggtcggcac cgacaccttc gccgtcggga cggccaaggc gagcctcgcg ttcgggtgcg
541 tcgtggcgag cgacatcgac accatgggcg ggccttccgg gatcgtcggg ctagggagga
601 cgccgtggtc gctagtcacc cagacgggcg tcgccgcgtt ctcctactgc ctggcgccgc
661 acgacgccgg gaagaacagc gcgctgttcc tcggctcctc cgcgaagctc gccggcggcg
721 gcaaggccgc ctcgacgccg ttcgtcaaca tctccggcaa cggcaatgac ctgagcaact
781 actacaaggt ccaactcgaa gggctgaagg ccggcgacgc gatgatcccg ctgccgccga
841 gcggcagcac cgtcctgctc gacaccttct cgccgatcag cttcctcgtc gacggcgctt
901 accaggccgt caagaaggcg gtgacggtcg ccgtcggcgc accgccgatg gcgacgccgg
961 tggagccgtt cgacctctgc ttcccgaaat cgggggcgag cggcgcggcg ccggacctcg
1021 tgttcacgtt ccggggcggc gccgccatga cggtgccggc gacgaactac ctgctcgact
1081 acaagaacgg cacggtgtgc ctcgccatgc tgagctcggc gcggctgaac tcgacgacgg
1141 agctgagctt gctgggaagc ttgcagcagg agaacatcca tttcctcttc gacctcgaca
1201 aggagacgct ctccttcgag cctgcagact gcactaaact ctcctagcta atcaatggct
1261 gctgctactt aattactttc ttcatatgta tgtgtacttc tgaataacgc agccttgcgg
1321 catgagctgc agcatgctca tgttggtgaa aataatactc cattcttatt attattctgt
1381 ggcgatctgg cctacttcga tttc
//