LOCUS AK061145 1741 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:006-208-D04, full insert
sequence.
ACCESSION AK061145
VERSION AK061145.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1741)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1741
/clone="006-208-D04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 250..1464
/db_xref="Osa1:LOC_Os01g46400"
/db_xref="RAP-DB:Os01g0652800"
/note="(RAP Annotation release2) Protein of unknown
function DUF231, plant domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R01-TIGRv4S1-001060R (Chr.1: short
arm=26728416, long arm=26730324, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG87757.1"
/translation="MKLHFVLRFLFGPVPVYFSALAILILLTNAQYFGLVGVTVPRAT
KLASSAPVVSVMKYCDIFRGEWVPDSDAPYYNHKTCYMIQEHQNCLKYGRPDLEFLKW
RWRPSGCELPRFDPVQFLQFNRHKSLAFVGDSLARNHMQSLLCLLSQVAYPKDMSANP
TTQNKVYHYRGYNFTVSMFWSPFLVKAREPDHDGPAHTGHWSLYLDEPDQSWVSEISR
FDYVLVSAANWFSRPSLFYEKRRLVGCSFCSRQYGVPDLTLYYSQRRAWRVALKAIND
LESLRGRVIVRMLSPMSHFENGTWDQGGNCKRTQPLRSNETVMEGRDLHFYTAQMEEY
RAAEKVAEAKGRRMMLMDATAAMLMRPDGHPSRYGHLPNQKVQLYNDCIHWCLPGPID
IWNDMLFQMLLV"
BASE COUNT 341 a 532 c 512 g 356 t
ORIGIN
1 gtagaagata cagcatgcga gcaagcaaga gcggttttag ccatcaaagc cgaaagccat
61 ccgggcattc gctctcccct cgctgctagc tagctttgct tgctaatcta gagctaagca
121 ccaaatggtc ctgattgttc ttctcgcttc tgaattgttg tgacctgtaa ctacaaaggc
181 atagttaggt agatatagaa agaggggggg agaggggccg gaggccggag cggcgggggc
241 ggcggcgaga tgaagctcca cttcgtgctc aggttcctgt tcggccccgt gccggtgtac
301 ttctcggcgc tggccatcct catcctgctg acgaacgcgc agtacttcgg gctggtgggc
361 gtcaccgttc cccgcgcgac gaagctggcg tcgtcggcgc cggtggtgag cgtgatgaag
421 tactgcgaca tcttccgcgg cgagtgggtg ccggactccg acgcgcccta ctacaaccac
481 aagacgtgtt acatgatcca ggagcaccag aactgcctca agtacggccg ccccgacctc
541 gaattcctca agtggcggtg gcgcccctcc ggctgcgagc tgccccgctt cgaccccgtg
601 cagttcctac agttcaaccg tcacaagtcg ctcgccttcg tcggtgactc gctggctcgc
661 aaccacatgc aatccctgct ctgcctcctc tcccaggtgg cgtatcccaa agacatgtcg
721 gcgaacccga cgactcagaa caaggtgtac cactacaggg ggtacaactt caccgtcagc
781 atgttctggt cgccgttcct ggtgaaggcg cgtgagcccg accacgacgg gccggcgcac
841 acgggccact ggagcctgta cctcgacgag cccgaccagt cgtgggtgtc cgagatctcg
901 cggttcgact acgtgctggt gtccgccgcc aactggttct ccaggccgtc gctcttctac
961 gagaagcggc ggctggtcgg gtgcagcttc tgcagcaggc agtacggcgt gccggacctg
1021 acgctctact actcgcagcg ccgggcgtgg cgcgtggcgc tgaaggcgat caacgacctg
1081 gagagcctcc gcgggcgggt gatcgtgcgg atgctgtcgc cgatgtcgca cttcgagaac
1141 gggacgtggg accagggcgg caactgcaag cggacgcagc cgctccggag caacgagacg
1201 gtgatggagg ggcgggacct gcacttctac acggcgcaga tggaggagta ccgcgccgcg
1261 gagaaggtcg cggaggccaa gggccggcgg atgatgctca tggacgccac ggcggcgatg
1321 ctgatgcggc ccgacggcca ccccagccgg tacggccacc tgccgaacca gaaggtgcag
1381 ctctacaacg actgcatcca ctggtgcctg ccaggcccca tcgacatctg gaacgacatg
1441 ctcttccaga tgctcctcgt ctaacgcgat cgatcgccaa ttcgccatcg gtaaatgcga
1501 cttctactgc acagacagga ttgctcttgc tgttgtttca aagcagtttt gacaaggatt
1561 tattcgaact tccccaatag attctttctt tctctctctt ttcccttcat ttcctttcat
1621 ttttcgttta tgctgacgcg aatttttaat ggatcgtcac cggaaagagt gaacgaaagt
1681 gtgcctccga aagaccactg tgatactgtc actccattca tttccaatac ttgaaaccaa
1741 c
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