LOCUS AK060824 2022 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-034-B04, full insert
sequence.
ACCESSION AK060824
VERSION AK060824.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2022)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2022
/clone="001-034-B04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2022
/db_xref="Osa1:LOC_Os02g43280"
/db_xref="RAP-DB:Os02g0647900"
/note="(RAP Annotation release2) Similar to Fatty
aldehyde dehydrogenase 1"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase 3B1, putative, expressed"
/note="mapping to R02-TIGRv4S1-001068F (Chr.2: short
arm=26073932, long arm=26079676, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 526 a 470 c 565 g 461 t
ORIGIN
1 aggccaaatc gcctgcaata attctctcgc cgtgtaacaa caacacacgc gccagccgag
61 agaaaccaaa cactagaccc ccaccacgag ttcacgacgt gcacgagcga gcgagctaga
121 aaagcaagcg agagcgagcg catggccccg gcaatggtag ccgccatggg agagaagccg
181 aagcccgcag tcgtgttggg tggcatggtg agcgggctga gggaggtgta cgagagcggg
241 aggaccaagg acctggagtg gaggcagtcg cagctcaagg cgctcatcag gctcctcacc
301 gacaaggagg aggagatctt cgccgtcctc cacgacgacc tcggcaagca ccgcggcgag
361 tcgttccgag acgagcttgg gattcttgtc aagtcgatca agtacacgct gcaaaacctc
421 aagaaatggg cggcttcgga gagggcggaa tcgccgttgg ttgcattccc tgcgaccgcg
481 atggtggtgc cggagccgct cggtgtcgtg ctcgttttct cctgctggaa tctgccacta
541 ggcttagcgt tggagccact ctccggcgcc atagcggccg gcaacgccgt tgttctgaag
601 ccctccgagc tcgcgccgtc caccgccgcg ttcctcgccg ccaacatccc gaggtatctg
661 gacagcaggg cagtgaaggt cgtcctggga ggccccaatg ttggagagga actcatggag
721 cacagatggg acaaggttct tttcaccggg agtgccagaa taggacgcat tatcatggct
781 aaagcagtca aacacttgac cccggttgca cttgaactgg gttcgaaatg cccatgcatc
841 gttgattggc tggacagtaa gagggatagg cagattgcgg tgaaccgcat aatcggagcg
901 aaatggtcga cttgtgctgg tcaggcttgc atcgccatcg atcacgtaat cgtcgaggag
961 agatttgcac cgattctgat tgagctactg aaatcaactc ttaagaggtt catggccaaa
1021 ccgggtggca tggcccgtat cctgaacgca aaacattttg agaggttgag tggctatctg
1081 gaggataata gggtggcagc ttctgtagtg cacggtggtt acatggaccc caagaaactg
1141 aatattgagc caaccttact gctaaatcct cctgctgatt ctgatgtcat gaccgaggag
1201 gtatttggcc cgattctccc aatcatcacg gtaaagaaga tcgaggattg catcgtgtat
1261 ttaaagtcca agccgaaacc gattgcgatg tacgccttca ccaacaacga gaggctgaaa
1321 cgccggatcg tagaggaaac gtcgtccggg agtgtcacat tcaacgacgc agttgtgcag
1381 tacgctcttg aaagcgtccc tttcggcgga gttggccata gcggattcgg acagtaccac
1441 ggcaagtact cattcgagct gttcagccac aagaaggcgg tgttcaagag aagctttctg
1501 atcgagttca tgttcagata cccaccatgg gatgagagaa agatcgggac gctgaggcac
1561 gtcttcagct ataactactt cttgctgttc ttcaacctgc tcggctttag gagatgaaga
1621 agccagccga agaaagattt cggctgtgaa gaagtaagca gagaaagaag ctactactat
1681 atagtagtat atagtagtag taatatacta cagctaaaca cgtggattat atacggttct
1741 accttgtgtg atgtgataat gtatcactat acttcagttg catattgtat tgtcacgttc
1801 tatgctctta tttattgtac tctttggaaa gaaagggagg gattgtttta ttttttttaa
1861 aaaaatgact agtggaaata gggtgctccg acatgttata cataaaagaa gatatgtaaa
1921 gagtttaagg gtgctttgga tcctcagcaa ggccaatcct agcattgtct agcaggttaa
1981 gtgtttaata caagtaaaaa aatagctttt gaagatgttg gt
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