LOCUS AK060757 1948 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-032-H04, full insert
sequence.
ACCESSION AK060757
VERSION AK060757.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1948)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1948
/clone="001-032-H04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 112..1641
/db_xref="Osa1:LOC_Os09g26880"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase family 7 member A1, putative, expressed"
/note="mapping to R09-TIGRv4S1-000441R (Chr.9: short
arm=16329127, long arm=16337461, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG87559.1"
/translation="MGSFARKEHQFLAELGLAPRNPGSFACGAWGGSGPVVTSTNPTN
NQVIAEVVEASAREYEEGMRACYDAAKTWMAIPAPKRGEIVRQIGDALRAKLHHLGRL
VSLEMGKILPEGIGEVQEIIDMCDYAVGLSRQLNGSIIPSERPNHMMMEVWNPLGVVG
VITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIAMTKIVASVLERNNLPGSI
FTAFCGGADIGQAISLDTRIPLVSFTGSTKVGLMVQQQVNARFGKCLLELSGNNAIIV
MDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYRTFLDQLVEVYKQVRIGDPL
ENGTLLGPLHTPASRDAFLKGIQTIRSQGGKILYGGSAIESEGNFVQPTIVEISPSAP
VVREELFGPVLYVMKVQNLKEAVEINNSVPQGLSSSIFTKRPDIIFKWIGPHGSDCGI
VNVNIPTNGAEIGGAFGGEKATGGGREAGSDSWKQYMRRATCTINYGSELPLAQGINF
G"
BASE COUNT 503 a 424 c 513 g 508 t
ORIGIN
1 agccaccgcc tcccccaccc caccccgatc ccctccccgc cgtacgggcg cagaaggaac
61 ccgtcttcta gaaggaggag gagggctacc tctctctctc tctcttctgc catggggagc
121 ttcgcgagga aggagcacca gttcctcgcc gagcttggcc tcgcgccgcg gaaccccggg
181 tccttcgcct gcggcgcctg gggcggctcg ggccccgtcg tcacgtccac caacccgacg
241 aacaaccagg tcatcgcgga ggtcgtggag gcgtccgcgc gtgagtacga ggagggcatg
301 cgcgcctgct acgatgccgc caagacctgg atggcgattc cagctccaaa gcgaggagaa
361 attgttaggc aaattggtga tgcattgaga gcaaagctcc atcacctggg caggcttgtg
421 tcacttgaga tggggaaaat tcttcctgaa gggattggag aggttcagga aatcattgac
481 atgtgtgatt atgctgtggg cctaagtcgc cagctaaatg ggtccatcat accatctgaa
541 cgcccgaatc atatgatgat ggaggtgtgg aatcctcttg gagttgttgg tgttatcaca
601 gcattcaatt ttccttgtgc tgtgctgggt tggaatgcct gcatagcttt ggtatgtgga
661 aactgtgttg tctggaaagg tgctccaact actccgttga tcactattgc aatgactaaa
721 atagttgcca gtgtattgga gaggaacaac ttgccaggct caatttttac agcattctgt
781 ggtggtgctg acattggcca agcaatttct cttgacacaa ggataccctt ggtttcattc
841 acaggaagca caaaggttgg tctaatggtt cagcagcaag tgaatgcaag atttggcaaa
901 tgccttcttg aacttagtgg gaacaatgcc attattgtaa tggatgatgc agacattcag
961 ctagctgtcc gttcagtgtt gtttgctgct gttggaacag caggacaacg ctgcactaca
1021 tgtcgtaggc tgcttcttca cgaaagcata taccgaacat ttcttgatca acttgttgag
1081 gtttataaac aagtccgaat tggggatcct ttggagaatg gtacgttact ggggccattg
1141 cacactcctg cttcaagaga cgccttcttg aaaggcatcc aaaccatcag atctcagggg
1201 ggaaaaattc tttatggagg atctgcaatt gaatctgagg gaaactttgt tcagccaaca
1261 attgtggaaa tttcaccctc tgcaccggtt gtgagagaag aactctttgg tcctgttctt
1321 tatgtgatga aagttcagaa tctgaaggaa gcagttgaaa tcaacaattc tgttcctcaa
1381 ggattgagca gttctatatt tacaaagaga ccagatatta ttttcaagtg gattgggcct
1441 catggtagtg actgtggcat tgttaatgta aatattccca caaatggtgc tgaaattggt
1501 ggagcttttg gtggagaaaa agctactggt ggtggacgag aagcagggag tgattcgtgg
1561 aagcagtaca tgaggagggc cacttgtacg atcaactatg gaagcgagct gcctctagca
1621 caaggaataa attttggcta gttcggtggt caagatcggc tgatgaacat gttaagcttc
1681 atcgacagac ttcaggaatt tctactggcg tcaactgaaa accgaaactt caacgcagca
1741 gcattgctat gtgtgcatat aataagagat gagtccaata ttaatgcatg tactgctctt
1801 gctatgatta gccgtcggag ttcgagtcca ataaacaggg aaaaattgcg tattccctga
1861 tcggttgata tgtaccaaca tttctgatgt aatctttaga acggtatcgg ttgaaaactt
1921 gaaatgaacg aaaacgcggt aagaatac
//