LOCUS AK060625 1443 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-026-G08, full insert
sequence.
ACCESSION AK060625
VERSION AK060625.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1443)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1443
/clone="001-026-G08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1443
/db_xref="Osa1:LOC_Os03g19670"
/db_xref="RAP-DB:Os03g0310000"
/note="(RAP Annotation release2) Lipolytic enzyme,
G-D-S-L family protein"
/note="(Rice Genome Annotation Project) anther-specific
proline-rich protein APG precursor, putative, expressed"
/note="mapping to R03-TIGRv4S1-000704F (Chr.3: short
arm=11038684, long arm=11040989, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 298 a 450 c 404 g 291 t
ORIGIN
1 accagtacca ccactaaaaa ttaaagtgag ctaagccaac actttggcgg cagaaacttg
61 cagctaagca ttgtccctcc tcatctgcaa aggcagagga gatacattcc ctcgtcctct
121 ttcgcttgat atcaagttat caacagtgct ctcctatccg tgagccgtgc acaactgcac
181 acgatggtgt tgattcgtct tactatgctg atctttatcg ccatcctcct tgccggccgc
241 acatgcgtac ttgttgttgc cggcggtgga atgccggcaa ccttcgtgtt cggtgactcg
301 ctcgtcgacg ccggcaacaa caactatctc gtctccctgt ccaaggcaaa ctacccacca
361 aacggcatcg acttcgacgg acaccagccc accggccggt acaccaacgg ccgcaccatc
421 gtggatatac tagggcagga aatgtcggga ggatttgtgc cgccctacct ggcgccggag
481 accgccggcg acgtcctgct taagggcgtc aactacgcgt ccggcggcgg aggcattctg
541 aaccaaaccg ggagcatctt cggtgggcgc atcaatctgg acgcccagat cgacaactac
601 gccaacaacc ggcacgagct gatcaagcgg cacggggagt tggaggcggt gaccctgctc
661 cgtggcgcgc tcttctcggt cacgatggga tccaacgatt tcatcaacaa ctacctcacc
721 ccaatcttcg gcgtgccgga gcgcgccgtg acgccaccgg aggtcttcgt cgacgccctc
781 atatccaaat accgggagca gctcataagg ctgtacctgc tggacgcccg taagatcgtg
841 gtggcgaacg ttgggccgat cgggtgcatc ccgtacctga gggacacgac gccgacggtc
901 ggaacggcgt gcgccaagtt ccctaaccag cttgcccgca acttcaaccg caagctgcgc
961 ggcctggtgg acgagctgag cgccaacctc accggctccc gcttcctcta cgccgacgtc
1021 taccgcgtct tctccgacat catcgccaac tacaagtcgc acgggttcga ggtggcggac
1081 tcggcgtgct gctacgtgag cgggaggttc ggcgggttgc tgccgtgcgg gccgacgtcg
1141 cagtactgcg cggacaggtc caagtacgtg ttctgggacc cgtaccaccc aagcgacgcc
1201 gcgaacgcgc tcatcgcccg ccggatcacc gacggcgagc cggcggacat cttcccgatc
1261 aacgtgcgcc agctgatcac gagctgatac cgataattcg gttgtagtac tagccttcac
1321 gggctaggag tagtagaagg aacttgcagg atagctattg atttctgtcc gtttggacgc
1381 atattttggg gagacgcact gatggatatg tgcatgtgat gccattgatg gactgttcga
1441 tct
//