LOCUS AK060509 1237 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-019-D01, full insert
sequence.
ACCESSION AK060509
VERSION AK060509.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1237)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1237
/clone="001-019-D01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 216..959
/db_xref="Osa1:LOC_Os09g33490"
/db_xref="RAP-DB:Os09g0509100"
/note="(RAP Annotation release2) No apical meristem (NAM)
protein domain containing protein"
/note="(Rice Genome Annotation Project) NAC
domain-containing protein 18, putative, expressed"
/note="mapping to R09-TIGRv4S1-000622F (Chr.9: short
arm=19748604, long arm=19750456, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG87473.1"
/translation="MATPGQQLPPGFRFHPTDEELVVQYLRRRALCRPLPAAVIPDVH
DATVLDPWDLPGAGDGEAYFFSFRQLAAASGGGGWRRRRAGSGYWKATGAEKPVFLRG
FGCGGGGGGGGQHLVGVKTTLLFLRAKPPSRTHWVMHEYRLAAAGAVAVAAAGQTKRG
NHSCMAQPGEWVVCRIFLKNNRSSRRRAGDADGETPVTGVHGHRRRQPSPSPSSSSCV
TAEVSDGEGEEEVSSGSINGAPSASQREA"
BASE COUNT 246 a 347 c 369 g 275 t
ORIGIN
1 actcatcatc aaactctctc tctctctctc tctctctctg aatctctgga tctctgaaaa
61 ctctgaacat tccaagaact cataagttac ctgtgatctg tgaagcttga gctgaagctg
121 tgacagtgtc tcactgatcg ttgatcactc agcttggctg ctactgtgca ttcactgcgt
181 ggttagctag ctaactgagc agaagagctt tagcaatggc gacgccgggg cagcagctgc
241 cgccggggtt caggttccac ccgacggacg aggagctggt ggtgcagtac ctccggcgga
301 gggcgctgtg ccggccgctc cctgccgccg tcatcccgga cgtccacgac gccaccgtgc
361 tcgacccctg ggacctcccc ggcgccggcg atggtgaggc ctacttcttc agcttccggc
421 agctcgcggc ggcgagcggc ggcggcgggt ggcggaggag gagggcgggg agtgggtact
481 ggaaggcgac gggggcggag aagccggtgt tcctgcgtgg cttcgggtgc ggcggcggcg
541 gcggcggcgg cggccagcac ctcgtcggcg tcaagacgac gctgctcttc ctccgcgcga
601 agccgccgtc gcgcacccac tgggtcatgc acgagtaccg cctcgccgcc gccggcgctg
661 tcgccgtcgc cgccgccgga cagacaaagc gcgggaacca tagttgcatg gctcagccag
721 gagaatgggt ggtgtgccgg atttttctga agaacaacag gtcatcaaga aggcgagccg
781 gcgacgccga cggcgaaacg ccggtcaccg gtgtccacgg tcaccgtcgg cggcagccgt
841 cgccgtcgcc gtcgtcgtcg agctgtgtca cggctgaggt ttcagacgga gaaggagaag
901 aagaagtcag cagtggcagc atcaatggtg ctccatctgc ctctcaaaga gaggcctaga
961 catgctgaaa atctccttaa ttaattacta gtactagtga ttttttttct tcttcttctt
1021 gttctctttt gtccctccat tgcttttcct gtacttctcc ttgtaccata atgattagta
1081 ggagtttaag tttaagcagc aggttgaaga gagaagcccc agcttaagaa agctcctaag
1141 taaagattac tgagcagcag ctgtgacatc tgtatcaatt gtaacttgta agtttctctt
1201 gatcatttat taagataagg aacctcaatt aagcagg
//