LOCUS AK060485 1811 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-013-D08, full insert
sequence.
ACCESSION AK060485
VERSION AK060485.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1811)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1811
/clone="001-013-D08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 377..1381
/db_xref="Osa1:LOC_Os09g35630"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R09-TIGRv4S1-000674R (Chr.9: short
arm=20494058, long arm=20496156, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG87460.1"
/translation="MMRAKAKGTFPPAAAAMKESSAPPPPAAAAAAAREDEWEVRPGG
MLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPED
QKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISR
ISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKVQRR
MQEKRVQKYVESLDAIRAKNAASHNKASGNGHAKPRAPHLPPPVSQRRQFQAPPPAAP
TTTKTAAAPAPPPTASWESFDLLSSMPSTSSSTVTTTMAAATTTTTTSPIPRFDWELF
"
BASE COUNT 359 a 582 c 499 g 371 t
ORIGIN
1 aaaaagcctg tccctgagtt gtacccgctc tatttttttt ttctctctct ttcttctcca
61 tctctcctcc ttccttccta acctctcccc acctacctcc ctgccgcctg atcctgattt
121 ccccaattga ggccagcgtc gagcacctgc acacacgcac acgctcgctg ctgcgcctcg
181 attctcgtcc cagatccgcc actcccttcc ccaattcgcc gtcacctgca gctgagtgtt
241 gcttgctcga gctagctggt ggttcttgcc ttgcagggcg aggcagtggt agcttgcgag
301 ctttagctgc gggagcggtt ggctttggtt ttggtttggt aaattggttg cgtgtgcgtg
361 tgcgtgccat gagaagatga tgcgcgccaa ggcgaaaggt acattcccac cggcggcggc
421 ggcgatgaag gagagctctg ctcctccgcc gcctgctgct gcggcggcgg cggcgaggga
481 ggatgagtgg gaggtgcggc caggtgggat gctggtgcag aagaggagcc cggacggcga
541 cgccccggcc gcgcccgtgc ccaccatccg cgtcaaggtc aagttcaacg gcgtctacca
601 cgagatctac atcaactcgc aggcgtcctt cggtgagctg aagaagcagc tgtcggcgcc
661 gacggggctg cacccggagg accagaagat cgtttacaag gacaaggaga gggactccaa
721 ggcgttcctc gacatggccg gcgtcaagga ccgctccaag atggtgctcc tcgaggaccc
781 aacggcgcag gccaagcgcc tcctcgagca acgccgcacc gacaaggccg agcgcgccgc
841 caagtccatc tcccgcatca gcctcgacgt cgacaagctc gccaccaagg tgacggctct
901 ggaggccatc gtcggcaagg gcgggagggt ggtcgacgcc gacgtggtca cgctcacgga
961 ggcgctgatg aacgagctgg tcaagctgga cgccatcgcc gccgagggcg aggtcaaggt
1021 gcagaggcga atgcaggaga agcgggtgca gaagtacgtg gagtcgctgg acgccatccg
1081 cgccaagaac gcggcgtcgc acaacaaggc cagcggcaac ggccacgcca agccccgggc
1141 gccgcacctc ccgccgccgg tgtcgcagcg gcggcagttc caggcgccgc cgcccgccgc
1201 gccaacgaca acgaagaccg ccgccgcgcc ggcgccgccg cccacggcga gctgggagtc
1261 gttcgacctg ctgtcctcga tgccgtccac gtcgtcgtcc accgtgacga ccaccatggc
1321 cgccgcgacg accaccacca ccacctcgcc gatcccgcgg ttcgattggg agctcttcta
1381 gctcgctctc gctctccctc tcctcctcct ccgatgggta cactactcta cactacacta
1441 cactacacac ttcacctttt ctttgtccat tcatctcgtg agctcattcg atcggtcgca
1501 ctagcacctg atcgatcagc agcgctcgcc attgtttctt tgatttcttc tgttcattct
1561 tcctcttctt tcttttttct tcatgttcct tttttcattt cgagagtata tctacaaaaa
1621 caaaaaagaa gaaacaccat gggtgatcga gtgtgttcag tacgtatgtc atcactcaag
1681 tcagttcatc aatccaatgc atggtcagtc acacagccaa aaaagaaaaa agtgggtggt
1741 atcatgacga agaattttcc ggtgacacta tatatataca aaaaaaacag catgtatatg
1801 tgattcgaaa c
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