LOCUS AK060423 1497 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-010-H01, full insert sequence. ACCESSION AK060423 VERSION AK060423.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1497) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1497 /clone="001-010-H01" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1497 /db_xref="Osa1:LOC_Os05g39770" /db_xref="RAP-DB:Os05g0475400" /note="(RAP Annotation release2) Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment)" /note="(Rice Genome Annotation Project) alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor, putative, expressed" /note="mapping to R05-TIGRv4S1-000826R (Chr.5: short arm=23272962, long arm=23275244, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 388 a 332 c 409 g 368 t ORIGIN 1 aaatgcagta cctgttcgac gaggatggcc gccgttacct ggatgctttt ggtggcattg 61 caaccgtttg ttgcgggcac tgccatccgg atgttgttga ggcgatggtc aaccaagcaa 121 agaggataca acactccaca gttctttacc tgaatcatgc tattgcagat tttgccgagg 181 cattggcagc caaaatgcct ggtgatctga aggttgtttt cttcacaaat tctggcacgg 241 aggcgaacga gcttgcactg atgattgccc ggctttacac tggttgccat gacattattt 301 cactcaggaa tggataccac gggaatgcgg ctggaacaat gggtgctacc gctcaatgca 361 actggaaatt taatgttgtt cagacgggag tgcaccatgc acttaatcca gacccatata 421 gaggtgcttt cggttctgat ggcgaaaagt atgcccgaga tgttcaggaa atcattgatt 481 ttggaactac aggaagggtc ggtggtttca tttcggaagc catacaggga gtgggtggaa 541 tagtggaact ggcaccagga tacttgcctg ctgtgtacaa tatggtaagg aaagctggcg 601 gcctctgcat cgccgacgaa gttcaggcgg gagtcgcacg aactggaagc cacttctggg 661 gatttgaatc gcacggcgtc atcccagaca tagttacaat ggcaaagggt ataggcaatg 721 gcataccgat cggagcagtc gtcacaaccc ctgagatcgc tcaggtgtta acccgcagga 781 gctacttcaa caccttcggt ggcaaccctg tcagcacagc cggtggccat gctgttctca 841 aggttctgga gaaggagaag ctccaggaga acgcatttgt ggttggctcc tacctgaagg 901 aacggctcaa caagctgaaa gagaagcatg acatcattgg tgatgttaga gggaaaggct 961 tccttcttgg ggttgagctg gtgaccgatc gccagaagaa gacaccggcc aaagttgaga 1021 tcggtcatgt catgaaccac atgaaagaca tgggtgtgct ggttgggaaa ggtggtttct 1081 acgggaacgt gttcagagta acacctccac tatgcttcac caaagaggac tccgatttct 1141 tcattgaggc gatggacatt tcactatcga agctgtgagt cggagaggga ctggcaggat 1201 caacctgtcc gcatgtgatc cgtatccata aataatgttg gggattggtg agatagcacc 1261 tcgttgtctc gtaatatgtc ctgcaaaccc accatgcgct gctcaacaca tggtccaata 1321 ggcgctcctc cggtctctaa tcagatgtgt tgtgactcgt gaccaataag cgcatgtcaa 1381 tgtcagatgt attgttatag ttattgttta catgctgaac gacaaaacga accaatcaca 1441 atgcccaggc gatgtaaatg ttgaaacaat tatattggca aatgtcagtg atttcgc //