LOCUS AK060343 1652 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-008-E01, full insert
sequence.
ACCESSION AK060343
VERSION AK060343.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1652)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1652
/clone="001-008-E01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1652
/db_xref="Osa1:LOC_Os01g07730"
/db_xref="RAP-DB:Os01g0172100"
/note="(RAP Annotation release2) Similar to Triose
phosphate/phosphate translocator, non-green plastid,
chloroplast precursor (CTPT)"
/note="(Rice Genome Annotation Project) triose
phosphate/phosphate translocator, non-green
plastid,chloroplast precursor, putative, expressed"
/note="mapping to R01-TIGRv4S1-000221F (Chr.1: short
arm=3708013, long arm=3710455, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 328 a 482 c 448 g 394 t
ORIGIN
1 ctctttgtgt ttgattattc gttccggtgt gcgcgaaagc ggggaaggag cggggtacgc
61 atctgtacct gtacgggatc ccggcgagat tcaaccttgc aacctcatgt ccttgtgttc
121 atgtgctcgt acgatacgaa aatagaattc tgatacgtct gtataatata ggggtgagag
181 ggtgccactg ccaactggtc acctagccca gaaacccggc aagatgcagc gcgcggcggc
241 ggcctcgcgc gccacggcat ggagcacggc acggcacggc gccgcccgcg tcaccgcctc
301 cgcctccttc tccgacggcg gcggcatcgt cgccggtgcg gcgctgccgc tccgtgttcg
361 cggcggccag ctcatgtccc tgccgctgct gtcgggtggc agggcggtca cggcgagggt
421 ggcggcggcg gaggcgccgt tgccggcgga cgacgccgac gcggcggctg ggcgggagag
481 aggcgcactc gcggagacgg cgcagctggg cgccatgatc gtggcgtggt acctcctcaa
541 catctacttc aacatctaca acaagcaggt gctgcagcca ttgccgttcc cctacaccat
601 caccgccttc cagctcgcgt tcggctcctt cgtcatcttc ctcatgtggg cgctcaagct
661 tcatcccgcg cccagaatct ccatttcaca gctggccaag atcgcgccgc tcgccgccgg
721 gcacatgctg ggcacggtgt tcaccaacat gagcctgagc aaggtcgccg tctccttcac
781 ccacaccatc aaggcgtccg agcccttctt caccgtcctc ctctccgcct tcttcctcgg
841 cgagacgcct tcgctgctgg tgctgggctc cctcgtgccg atcgtcggcg gcgtcgcctt
901 ggcatcgttg actgaactct ctttcaactg gattgggttc tggagtgcga tggcatcgaa
961 tcttctatac caatcaagaa atgtgctcag caagaagctt cttggcggcg aagaggaagc
1021 gttggatgac ataaacctct tctcaatact cactatactg tcatttctgc tgtctttgcc
1081 tctgatgctg ttctcagaag gggtcaagtt cagcccagga tacctccgga gcactggcct
1141 taacctccaa gagctgtgtg taagagcagc actagctggc ttttgcttcc atggctacca
1201 gaagctctcc tacttgatcc tggccagagt gtcacctgtc acccactctg tcgccaactg
1261 cgtcaagcgt gtggtcgtca tcgtggcgtc tgttctcttc ttcagaaccc caatttcacc
1321 tgtcaatgca ctaggaactg gtgttgcatt gggaggagtt ttcctgtatt ccaggttgaa
1381 gagaacaaaa ccaaagaatg cctgagaaga gaggacacgc ttaattacag ttctcgcagt
1441 ttttgttttg atttgggata catagattag gcttgtacat cgacgaagaa aatgagttgg
1501 gttcggtttt agcaccgatt gtactacacg acctacagtc tcatttttca caaaattgta
1561 agaacattgc tgaatattct cagatctcga gagaaattca ttagtgtcca ggcgcaaaat
1621 caataaagct atcacttgag tgtacgcttg ag
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