LOCUS AK060237 1512 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-003-C10, full insert
sequence.
ACCESSION AK060237
VERSION AK060237.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1512)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1512
/clone="001-003-C10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 73..1344
/db_xref="Osa1:LOC_Os09g16330"
/note="(Rice Genome Annotation Project) PDR5-like ABC
transporter, putative, expressed"
/note="mapping to R09-TIGRv4S1-000231R (Chr.9: short
arm=9969572, long arm=9972069, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG87376.1"
/translation="MDEPTSGLDARAAAIVMRAIRNTVDTGRTVVCTIHQPSIDIFES
FDELFLMKRGGEEIYVGPVGQHSCELIRYFESIEGVSKIKHGYNPSTWMLEVTSTVQE
QITGVNFSEIYKNSELYRRNKSMIKELSSPPDGSSDLSFPTEYSQTFITQCLACLWKQ
SLSYWRNPPYTAVKYFYTIVIALLFGTMFWGVGRKRSNQQDLFNAMGSMYASVLFMGV
QNSSSVQPVVSVERTVFYRERAAHMYSPLPYALGQVAIELPYILVQSLIYGVLVYAMI
GFEWTAAKFFWYLFFMYFTLSYYTFYGMMSVGLTPSYNVASVVSTAFYAIWNLFSGFI
IPRTRIPIWWRWYYWVCPVAWTLYGLVTSQFGDVTDTFDNGVRISDFVESYFGYHRDF
LWVVAVMVVSFAVLFAFLFGLSIKIFNFQKR"
BASE COUNT 415 a 299 c 335 g 463 t
ORIGIN
1 ggattatcaa cagaacaaag gaaaaggcta acaatagcag tggagctagc cgctaaccca
61 tctatcatat tcatggatga accaacatct ggacttgatg cacgagcagc agccattgtc
121 atgagggcaa taagaaatac tgtggacaca ggaagaacag ttgtttgcac aattcaccaa
181 ccaagcattg acatatttga atcttttgat gagctattcc tgatgaaacg aggaggtgag
241 gagatttatg taggtccagt aggtcagcac tcgtgtgaat tgatcagata ttttgagtct
301 attgaaggtg tcagcaaaat aaaacatggc tacaatccat caacatggat gctggaagtg
361 actagtactg tacaggaaca gataactggg gttaacttca gtgaaatata caagaattct
421 gaactgtaca ggaggaataa aagtatgata aaggagctaa gctcacctcc tgatggttca
481 agtgacctat cctttccaac agaatactct caaactttca tcacacaatg tttggcttgc
541 ctatggaagc aaagtctgtc ctactggaga aaccctccat atactgctgt caaatacttc
601 tacaccattg taattgcact gttgtttgga acaatgttct ggggtgttgg cagaaaaagg
661 agcaatcaac aggacttgtt caatgccatg ggctccatgt atgcgtcagt tttatttatg
721 ggagtgcaga attcttcttc cgttcagcca gttgtgtctg ttgaacgcac tgtgttctac
781 agggaacgag cagctcacat gtattcacct ttgccatacg ccttgggaca ggttgcaatt
841 gaacttccat acatccttgt tcagtcctta atatatggtg ttctagtgta tgcaatgatt
901 ggatttgagt ggacagctgc caagttcttt tggtacctgt ttttcatgta tttcacttta
961 tcatactaca cattttatgg catgatgtcg gtgggtctga ctccaagcta taacgtggcc
1021 tctgttgttt ccactgcatt ctatgccata tggaaccttt tctcaggatt tataatacca
1081 agaactcgaa ttccaatatg gtggagatgg tactattggg tctgccctgt tgcgtggaca
1141 ctctacgggt tggtaacttc acagttcggg gatgtaactg acacgtttga taatggtgtc
1201 cgtatatctg actttgtcga gagctacttt ggttaccatc gtgacttctt gtgggtggtt
1261 gccgtgatgg tggtctcatt tgccgtcctc ttcgccttcc ttttcgggct ctcaatcaag
1321 atattcaact tccagaagag ataaattgag gaaggcatac ccgagttgtg tatagcatgt
1381 gaatactagc acatcgtaat tgtacagctt gaaagcacat ttgtatcacc ataattgtac
1441 atcttaaagc acattgtgta tcctggaatt catggtactc agattaacaa gttgtttcat
1501 tgagtttttt gc
//