LOCUS AK060195 1824 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-001-F01, full insert
sequence.
ACCESSION AK060195
VERSION AK060195.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1824)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1824
/clone="001-001-F01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1824
/db_xref="Osa1:LOC_Os02g05320"
/note="(Rice Genome Annotation Project) phosphatidate
cytidylyltransferase, putative, expressed"
/note="mapping to R02-TIGRv4S1-000166F (Chr.2: short
arm=2554070, long arm=2556276, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 496 a 330 c 377 g 621 t
ORIGIN
1 gaacacaaac agttgaggaa tgcacacaga agagaattga ctgtggtgta ttttatgttt
61 cattgttggt agcactattg ttgttagtgc catcatggac gcgtcttatt caaggttttg
121 aagtgcatcc atttgtttgg tgagcatata agtttgcatt tcattggaag ggcataaaag
181 catgcactct gttagtcaaa tattgaaaaa tttcttcctg tgttgcttct aaaccttgtg
241 catttttgta cgtattgaat tttggttcac ttaatggttt atattcacag ggtttttaac
301 tatattttca ccgattcacg tgaacggctt gctttatgcg catactggat atttgtgata
361 tatgtatcaa ttagaaggtt ctacagtata tcaaaacaaa gcaaaacgga gaggattctt
421 ttgcgcaagt attaccatct cgttgctgtc ctaattttct ctcctgcagt aatatttcgg
481 cctgatttct tggacttagc atttggtgca gcatttgccg ttttcttaat attggagatg
541 gttcgagttt gggaaatata ccctcttggg catattgtgc atcagttcat gagtgccttc
601 actgatcatc gcgattcgga aattctaatt gttagtcatt tctcactctt gctgggatgt
661 gcacttccta aatggatgtc atcaggattc aatgaccgac ctcttacacc atttgctgga
721 attctcagct tgggtattgg tgataccatg gtaggttcta tgtccagtgc gtgatcagtt
781 aatattttct tatgttagct gcgttcagta tgatgaattc tcttgtttta cctaggcatc
841 aatgataggt tataagtatg gtgtcctaag atggagcaag acaggaagtg agtttaattt
901 ccattattat ttattccatg attgataatt gatctcttat gcacatactt ttgaaatgtt
961 agagaaaaca attgagggca cagcagcagg cataacttct gtattagcag cctgctcaat
1021 cctgctgtca ctcttagctt caagtggata catactttca cagcattgga tatcactttt
1081 ggtagctgtg acattgagcg gtttattgga agcatataca gcccaactcg acaacgcttt
1141 catacccctt gtcttctata gcctcctatg tctataggag caaccaattg tacatcaaac
1201 taccttgagg ccctattctt accattacta atatctagtg actagtgcag tacagtatag
1261 gtatagccct tcgaattttt tttttaaatc ctcttattgg tcgcattctc tgtattcctg
1321 gaccgagaaa ttgtgtccat cactaaaaag ttgagtttag gtttaggaaa taaagatgaa
1381 aatatgaaag gttgtttagt gaatccttca gtagagagca tctttggtat gatagacttc
1441 tgagcctatc tggaggcatc aatgtatcat ggaaggtatg ttgtctttca gaaccagaac
1501 ttcttctgca ggtggtgaga cctatttcac cccacaactc cacaagcagt tgggcaagaa
1561 tagcaagctg agagtaaagc catatgctgc aaggagcctg aaatacggag acttggttca
1621 gaattagtgt atatggtacc ttatttccat ggacatgcga agtgtaatta gttgtagtag
1681 ctaatctcct gtaagttttg cgtcatcact gtacggagta aaagatcact actcagattg
1741 cagccgcgca ttgatgtaaa ttttgttctt gacctgagaa aaaatgaaat cgaagtaagc
1801 aaagctgcaa attaatgttc tctt
//