LOCUS AK059858 1407 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:006-207-B03, full insert
sequence.
ACCESSION AK059858
VERSION AK059858.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1407)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1407
/clone="006-207-B03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 116..1195
/db_xref="Osa1:LOC_Os09g23530"
/db_xref="RAP-DB:Os09g0399800"
/note="(RAP Annotation release2) Cinnamyl alcohol
dehydrogenase (EC 1.1.1.195)"
/note="(Rice Genome Annotation Project) mannitol
dehydrogenase, putative, expressed"
/note="mapping to R09-TIGRv4S1-000346R (Chr.9: short
arm=13981979, long arm=13983583, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG87172.1"
/translation="MEHDGTAALGWAARDASGHLSPFSFTRRVQEEDDVTIKVLYCGI
CHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACD
SCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLL
CAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEA
LERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPA
APLQLPAIAIIDGGKRVAGSGGGSVAECQAMLDFAGEHGIAADVEVVAMGDVNAALGR
LERNDVRYRFVIDVAGTLHAAAAPS"
BASE COUNT 237 a 420 c 503 g 247 t
ORIGIN
1 ctatttaatc ctgtatcacg cccagattcc tgagtccaaa accaactact gatagtctaa
61 tagtatcgat cactgaggaa gaagagcata gcaaaagagt ggtcgatcgt catcaatgga
121 gcacgacggc acggcggcgc tcggctgggc ggcgcgggac gcctccggcc acctctcacc
181 gttcagcttc acaagaaggg ttcaggagga agacgacgtg acgatcaagg tgctctactg
241 cggcatctgt cacaccgacc tgcacaccat caagaacgag tggggcaacg ccatgtaccc
301 cgtcgtcccc ggccacgaga tcgtcggcgt cgtcgccggc gtcggcgccg gcgtgaccag
361 gttcaaggcc ggcgacacgg tgggcgtggg ctacttcgtc gactcgtgcc gcgcctgcga
421 cagctgcggc aagggggacg agaactactg cccgacgatg gtgatcacgt cgaacggcac
481 ggactacggc ggcgccacca cccagggcgg tttctccgac gtcatggtcg tgaggcagga
541 ctacgtgttg cgcgtcccgg cgagcctgcc gccggacggc gcggcgccgc tgctgtgcgc
601 cggcgtgacg gtgtacagtc cgatggtgga gtacggcctg aacgcccccg ggaagcacct
661 cggcgtggtc ggcctcggcg ggctgggcca cctgggcgtc aagttcggca aggcgttcgg
721 gatgaaggtg acggtgatca gctcgtcgcc ggcgaagcgg gaggaggcgc tggagcggct
781 cggcgccgac gcgttcctgt cgagccgcga cggcgagggg atggcggcgg cggcggcgac
841 gatggacggg atcatcgaca cggtgtccgc ggggcacccg ctggtgccgc tgctgtcgct
901 gctgaagccc aaggggcaga tggtggtggt gggcgcgccg gcggcgccgc tgcagctgcc
961 cgcgatcgcc atcatcgatg gcgggaagcg cgtcgccggg agcggcgggg gcagcgtggc
1021 cgagtgccag gcgatgctgg acttcgccgg cgagcacggc atcgccgcgg acgtcgaggt
1081 ggtcgccatg ggcgacgtca acgccgccct cggccgcctc gagaggaacg acgtgaggta
1141 ccgcttcgtc atcgacgtcg ccggcaccct gcacgccgcc gccgcgccgt cctaggctcc
1201 tagcaatgtt gccttcgtgt caacgtgctt gcgtgtcatt gtgcggtcgt gtgtgtaacc
1261 gtgaaaggag aggcgtttgg taatggagca ataacgttgt ttttggaccg tgatggtccg
1321 tgggcttgtg atgggttatg tgggccacct cgagttgggc ccttctcttg tccgattctt
1381 tgtccaaaga ttgaaataag ttcatct
//