LOCUS AK059692 1711 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-032-B08, full insert
sequence.
ACCESSION AK059692
VERSION AK059692.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1711)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1711
/clone="001-032-B08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1711
/db_xref="Osa1:LOC_Os01g01710"
/note="(Rice Genome Annotation Project)
1-deoxy-D-xylulose 5-phosphate reductoisomerase,
chloroplast precursor, putative, expressed"
/note="mapping to R01-TIGRv4S1-000017R (Chr.1: short
arm=371553, long arm=377336, direction=reverse) for TIGR
Pseudomol ver4"
BASE COUNT 471 a 372 c 428 g 440 t
ORIGIN
1 atcccgacca gacgtcgagt cgagcattaa ctcagtcagg gtggccatgg cgctcaaggt
61 cgtctctttc cccggggact tggccgcggt ctcattcctc gactccaaca gaggaggagc
121 tttcaaccag ctcaaagtgg acctcccgtt tcaaacgagg gacagaagag cagtttccct
181 gagaaggact tgctgttcaa tgcaacaggc tccaccacca gcatggcctg gtcgagccgt
241 tgttgaactt gggaggaggt catgggatgg ccccaagcct atctcaattg ttggctcaac
301 cggttctatt ggcacacaga cattggacat agttgcggag aatccagata aattccgggt
361 tgttgctctt gctgctggct ccaatgtgac tcttctagct gatcaggtga aaacattcaa
421 accaaagctt gttgctgtaa gaaatgagtc attagttgat gagctaaagg aagccttagc
481 tgattgtgat tggaagccag aaattattcc tggtgagcaa ggtgtcatag aggttgctcg
541 ccacccagat gcagttacag ttgttactgg gatagtaggg tgtgcaggac tgaagcctac
601 agttgctgca attgaagctg ggaaagatat agcattggcg aacaaagaga cacttattgc
661 aggtggtcct tttgtgcttc cccttgcaca aaagcacaaa gtgaaaatac ttcctgctga
721 ttctgagcac tctgctatat ttcagtgtat acaaggcttg cccgaaggag cacttcgccg
781 cattattttg actgcatcag gtggtgcttt cagggactgg ccagttgaca agttgaaaga
841 agtaaaagtt gctgatgctt taaagcgccc gaactggaat atggggaaga agattactgt
901 agattctgct acattattca acaagggttt agaagttatt gaagcacatt atttatttgg
961 tgctgaatac gatgacattg aaattgtgat ccacccacaa tctatcatac actctatgat
1021 tgaaacccag gattcatctg tgttggctca actgggatgg ccagatatgc ggataccaat
1081 cttatacacc atgtcttggc cagacagaat ctattgctca gaggtcacct ggccccgact
1141 agatctttgc aagctgggtt cactgacatt caaagctcct gacaatgtga aatacccgtc
1201 gatggatctc gcctatgcag ctggaagagc tgggggcacc atgacaggag ttctgagtgc
1261 tgctaatgag aagactgtgg agttgttcat cgatgaaaag atcgggtacc tggacatctt
1321 caaggtggtg gagctgacat gcgacgctca tcggaatgag ctagtaacaa ggccatcact
1381 ggaggagatc atacattatg atctgtgggc gagggagtat gctgccagcc tacagccatc
1441 cactggcctc agccctgtac ctgtctagta cttgtagcaa tacaaaatta cagtagcatt
1501 gtacaccact gccgtgccag ctccatgcat agtcagcagc tggccactct ctagctatat
1561 ctagatgcga gagaatttta aggatgtaaa tcatgccttc acatgaataa atcgttcgtc
1621 cgtgcgttgt gtattcatgt aaattttgac ggatggtcaa gtaaaaataa caatggcaaa
1681 ttaatttagg gaagaaaaaa caaaaaaaaa g
//