LOCUS AK059336 1858 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert
sequence.
ACCESSION AK059336
VERSION AK059336.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1858)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1858
/clone="001-026-A12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1858
/db_xref="Osa1:LOC_Os11g38900"
/note="(Rice Genome Annotation Project) histone-lysine
N-methyltransferase, H3 lysine-9 specific SUVH1,
putative, expressed"
/note="mapping to R11-TIGRv4S1-000692F (Chr.11: short
arm=22660108, long arm=22662904, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 535 a 329 c 470 g 524 t
ORIGIN
1 ttgttttcag atgatcctag ggaatctgtt gataatgtac tcatgatgtt tgatgcactg
61 cggcggaggc tcatgcagtt ggatgaggtg aagcaaggag caaagcagca acataactta
121 aaggccggga gtatcatgat gagtgctgaa cttcgtgcaa ataagaacaa gaggattgga
181 gaggttccag gtgtcgaggt tggtgatatg ttctacttca gaatagagat gtgtctggtt
241 ggactgaata gtcagagcat gtctgggatt gattacatgt ctgctaagtt tggtaatgag
301 gaggatcctg tggctatcag tatcgtgtca gctggtgtgt atgagaatac cgaagatgac
361 ccagatgtgc tggtttacac tggacagggc atgtctggaa aggatgacca aaagcttgaa
421 agaggtaatc ttgcacttga aaggagtttg catagaggta atcaaatcag agttgttcgt
481 agtgtaagag atttgacttg tcctactggt aagatataca tttatgatgg cctttataaa
541 ataagagaag catgggtgga gaaaggaaaa actggcttta atgtgtttaa acacaagctg
601 ctcagagaac ctggtcaacc tgatggcata gcagtgtgga agaagactga aaaatggagg
661 gagaatcctt cctctcgaga ccatgttata ttgcgtgaca tatcatatgg tgcagaaagc
721 aagcctgttt gccttgtgaa tgaagtggat gatgagaaag gtcctagcca cttcaactac
781 acaactaaac tgaactacag gaattctctc agctcaatga gaaagatgcg aggctgcaat
841 tgcgcaagtg tgtgccttcc tggtgataac aactgctctt gcactcatcg aaatgccggt
901 gatcttccat acagtgcttc aggcatactt gttagccgga tgcctatgct gtatgagtgt
961 aacgattcct gtacatgctc acataattgc cggaaccgag ttgtacagaa aggttctcag
1021 atccactttg aggtgtttaa gacaggagat cgaggttggg gacttcgtag ttgggatcca
1081 attcgggcag gcacatttat ttgtgaatat gcaggagaag ttattgacag aaacagtatc
1141 attggagaag atgattacat ctttgagaca ccgtcttctg agcagaattt aagatggaac
1201 tatgcaccag aattactggg tgaacccagt ctttctgact caagtgagac acctaagcaa
1261 ctgccaataa ttatcagtgc aaaacgaact ggaaacatag ctcgctttat gaaccacagc
1321 tgctcaccaa atgttttttg gcaaccagtt ttgtatgatc atggtgacga gggatatcca
1381 catatcgcat tctttgcaat caagcatatt cctccgatga cagagcttac atatgattat
1441 ggtcagagcc agggtaatgt tcaactggga atcactatga agcagcaggg tgcattcagt
1501 gtttcaagat gccatgtaat aaggttggcc ttcgtctgga tgagaatgca aaagagggta
1561 tttattgcag aaagcattgg cattgtacca aactttattg gaataactag tatttagcgt
1621 agcatctgaa ttccgagaag gttggaaccg tgttactatg ttcttgtagt gtagttgttt
1681 ctcctgttta agagaacttt accaactgta gaatgccatg catatggttg catcgcaaga
1741 tcttcctggg cttcgcatgc cagtcgtgca ctcgccgtat gtttttctgt aatattaatg
1801 gctacataat gcatcctgta ataatcatgg tagtagctcc agtcatctgc tgaggttg
//