LOCUS AK059301 1828 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-025-F05, full insert sequence. ACCESSION AK059301 VERSION AK059301.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1828) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1828 /clone="001-025-F05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 178..1455 /db_xref="Osa1:LOC_Os01g55360" /note="(Rice Genome Annotation Project) phosphatidate cytidylyltransferase, putative, expressed" /note="mapping to R01-TIGRv4S1-001360R (Chr.1: short arm=32197780, long arm=32204388, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG86953.1" /translation="MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQ NKYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQ LPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYI AGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIV INDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPR KDLSTGWLRCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWHALALGLFASIIAPF GGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPQNYSVEL ILEQILRNLTFEEQKFLYQQLGEIYRERQLMQS" BASE COUNT 451 a 387 c 415 g 575 t ORIGIN 1 cctctccctc tctagtctct ctctcctccc ccttctcgaa gcacgctgcc gccgcctcct 61 ctccccgcgc cgcgcgcctc gccgagttag ggttccggcg agctcggggc ctttctccgg 121 cgacggcgcc ctcctccggc ccgagggctc gcttcgcggt gagatcaaat agcagcgatg 181 gaaagggaca caagctctag tgatgtttct gcttctcatg taggacgtgc caggcagcga 241 agacgtccta ctgaggctac tgcagatggg aatagaacca atggaccagc tttgcttgtc 301 aatgatcaga ataagtacaa gtcaatgctt atccgtacat attctacagt atggatgatt 361 ggaggctttg tgttgatagt ttatatgggt cacctctata tctgggccat ggtggttgtt 421 attcaaatat tcatggccaa agagcttttt aacctactca gaaaatccag tgaagaaaaa 481 caactaccag gtttcaggct actgaattgg cacttctttt tcacagcaat gttgtttact 541 tatgggcgtt ttcttagtcg acagcttgtt aacacagtaa cttcagatca cttattgtat 601 aaggttgtca gtggtctcat aaagtatcag atgttcattt gctattttct ttacattgct 661 ggatttgtct ggtttatttt gactctgaag aaaaagacat acaagtatca gttcaaacaa 721 tatgcctgga cgcacatgat ccttttaacg gtttttgcac aatcttcttt taccgtggca 781 aatatatttg aagggatgtt ctggtttctg ttgcctgctt ctctcattgt gattaacgac 841 attgctgcct atctatttgg gttctttctt gggagaacac ctctgatcaa gttatctcca 901 aagaaaactt gggaaggttt tattggtgca tctgtgacaa ctatcatatc tgcttttgtg 961 ttagcaaatg taatgggccg tttccaatgg ttgacatgcc caagaaaaga cctgtcgaca 1021 gggtggcttc gttgtgaccc tggtcctatg tttaagccag aacattattc tttgggagaa 1081 tgggtgccaa aggggttccc ttggaaggaa gttgttcttt tgcctgtgca gtggcatgct 1141 ttagcactag gtttgtttgc atcaataata gcaccttttg gaggtttctt tgcaagtggc 1201 ttcaagaggg cctttaaaat aaaggatttt ggagacagca tacctgggca tggtgggatt 1261 actgaccgaa tggattgtca gatggttatg gcagtttttg catacatata tcaccaatca 1321 ttcatatcgc cccaaaacta ctctgttgag ctaatcttgg aacagattct aagaaatcta 1381 acctttgagg agcagaaatt cttatatcag cagcttgggg aaatctaccg tgaaaggcaa 1441 ttaatgcaga gctgagaact agtttgctta tgatgaagca tacagtatgt tgtttttgag 1501 cgctcggttc catgtatagc agcatagctt ctctgtacgg cgatagagca acgtcccttt 1561 ccaaaccatt gtacagaata gagtgtggat ggggtttagc gatttaggta cttgattcgc 1621 tctccactta cgttgccttc tctggcgatc ggtttatcct tttacgctaa ttctcatcat 1681 ttctgccctt gtaacaaggg aaccggaaaa ggttgtattc gtgtatatca cttcgtgtgt 1741 tggcctcaca tcaaatatgt gcaagatgca caagataaca caggaaatga ggaaaattta 1801 ttcccctttt aaaagatatt ttcgtggt //