LOCUS       AK059301                1828 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-025-F05, full insert
            sequence.
ACCESSION   AK059301
VERSION     AK059301.1
KEYWORDS    oligo-capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1828)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1828
                     /clone="001-025-F05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             178..1455
                     /db_xref="Osa1:LOC_Os01g55360"
                     /note="(Rice Genome Annotation Project) phosphatidate
                     cytidylyltransferase, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-001360R (Chr.1: short
                     arm=32197780, long arm=32204388, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG86953.1"
                     /translation="MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQ
                     NKYKSMLIRTYSTVWMIGGFVLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQ
                     LPGFRLLNWHFFFTAMLFTYGRFLSRQLVNTVTSDHLLYKVVSGLIKYQMFICYFLYI
                     AGFVWFILTLKKKTYKYQFKQYAWTHMILLTVFAQSSFTVANIFEGMFWFLLPASLIV
                     INDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTIISAFVLANVMGRFQWLTCPR
                     KDLSTGWLRCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWHALALGLFASIIAPF
                     GGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFISPQNYSVEL
                     ILEQILRNLTFEEQKFLYQQLGEIYRERQLMQS"
BASE COUNT          451 a          387 c          415 g          575 t
ORIGIN      
        1 cctctccctc tctagtctct ctctcctccc ccttctcgaa gcacgctgcc gccgcctcct
       61 ctccccgcgc cgcgcgcctc gccgagttag ggttccggcg agctcggggc ctttctccgg
      121 cgacggcgcc ctcctccggc ccgagggctc gcttcgcggt gagatcaaat agcagcgatg
      181 gaaagggaca caagctctag tgatgtttct gcttctcatg taggacgtgc caggcagcga
      241 agacgtccta ctgaggctac tgcagatggg aatagaacca atggaccagc tttgcttgtc
      301 aatgatcaga ataagtacaa gtcaatgctt atccgtacat attctacagt atggatgatt
      361 ggaggctttg tgttgatagt ttatatgggt cacctctata tctgggccat ggtggttgtt
      421 attcaaatat tcatggccaa agagcttttt aacctactca gaaaatccag tgaagaaaaa
      481 caactaccag gtttcaggct actgaattgg cacttctttt tcacagcaat gttgtttact
      541 tatgggcgtt ttcttagtcg acagcttgtt aacacagtaa cttcagatca cttattgtat
      601 aaggttgtca gtggtctcat aaagtatcag atgttcattt gctattttct ttacattgct
      661 ggatttgtct ggtttatttt gactctgaag aaaaagacat acaagtatca gttcaaacaa
      721 tatgcctgga cgcacatgat ccttttaacg gtttttgcac aatcttcttt taccgtggca
      781 aatatatttg aagggatgtt ctggtttctg ttgcctgctt ctctcattgt gattaacgac
      841 attgctgcct atctatttgg gttctttctt gggagaacac ctctgatcaa gttatctcca
      901 aagaaaactt gggaaggttt tattggtgca tctgtgacaa ctatcatatc tgcttttgtg
      961 ttagcaaatg taatgggccg tttccaatgg ttgacatgcc caagaaaaga cctgtcgaca
     1021 gggtggcttc gttgtgaccc tggtcctatg tttaagccag aacattattc tttgggagaa
     1081 tgggtgccaa aggggttccc ttggaaggaa gttgttcttt tgcctgtgca gtggcatgct
     1141 ttagcactag gtttgtttgc atcaataata gcaccttttg gaggtttctt tgcaagtggc
     1201 ttcaagaggg cctttaaaat aaaggatttt ggagacagca tacctgggca tggtgggatt
     1261 actgaccgaa tggattgtca gatggttatg gcagtttttg catacatata tcaccaatca
     1321 ttcatatcgc cccaaaacta ctctgttgag ctaatcttgg aacagattct aagaaatcta
     1381 acctttgagg agcagaaatt cttatatcag cagcttgggg aaatctaccg tgaaaggcaa
     1441 ttaatgcaga gctgagaact agtttgctta tgatgaagca tacagtatgt tgtttttgag
     1501 cgctcggttc catgtatagc agcatagctt ctctgtacgg cgatagagca acgtcccttt
     1561 ccaaaccatt gtacagaata gagtgtggat ggggtttagc gatttaggta cttgattcgc
     1621 tctccactta cgttgccttc tctggcgatc ggtttatcct tttacgctaa ttctcatcat
     1681 ttctgccctt gtaacaaggg aaccggaaaa ggttgtattc gtgtatatca cttcgtgtgt
     1741 tggcctcaca tcaaatatgt gcaagatgca caagataaca caggaaatga ggaaaattta
     1801 ttcccctttt aaaagatatt ttcgtggt
//