LOCUS AK058745 1984 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-019-H02, full insert
sequence.
ACCESSION AK058745
VERSION AK058745.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1984)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1984
/clone="001-019-H02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 104..1846
/db_xref="Osa1:LOC_Os01g04950"
/note="(Rice Genome Annotation Project) peptide
transporter PTR2, putative, expressed"
/note="mapping to R01-TIGRv4S1-000136F (Chr.1: short
arm=2292741, long arm=2294910, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG86793.1"
/translation="MGEVAEDIYTQDGTVDVKGNPATKKNTGNWRACPYILANECCER
LAYYGMSTNLVNYMKTRLGQESAIAANNVTNWSGTCYITPLLGAFLADAYMGRFWTIA
SFMIIYILGLALLTMASSVKGLVPACDGGACHPTEAQTGVVFLALYLIALGTGGIKPC
VSSFGADQFDENDEGEKRSKSSFFNWFYFSINIGALVASSVLVYVQTHVGWGWGFGIP
AVVMAVAVASFFVGTPLYRHQRPGGSPLTRIAQVLVASARKWGVEVPADGSRLHETLD
RESGIEGSRKLEHTGQFACLDRAAVETPEDRSAANASAWRLCTVTQVEELKSVVRLLP
IWASGIVFATVYGQMSTMFVLQGNTLDASMGPHFSIPAASLSIFDTLSVIVWVPVYDR
LIVPAVRAVTGRPRGFTQLQRMGIGLVISVFSMLAAGVLDVVRLRAIARHGLYGDKDV
VPISIFWQVPQYFIIGAAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLST
LLVTIVTHVTTRNGAVGWIPDNLNRGHLDYFFWLLAVLSLINFGVYLVIASWYTYKKT
ADSPDDKAEHAGAN"
BASE COUNT 359 a 601 c 651 g 373 t
ORIGIN
1 atatatctgt acataaccca atatcttcct catcagagac agtcgttgca aactttgcag
61 gtagccagcc actgtgagag tgtgagctga ggtgagcatc gccatgggag aggttgcaga
121 agacatctac acccaagatg gcaccgtgga cgtcaagggc aacccggcca ccaagaagaa
181 caccggcaac tggcgtgcct gcccctacat cctcgctaac gagtgctgcg agaggctggc
241 ctactatggc atgagcacca acctcgtgaa ctacatgaag acgcggctcg ggcaggagag
301 cgccattgcc gccaacaatg tcaccaactg gtcggggact tgctacatca ccccccttct
361 cggtgccttc ttggctgatg cctacatggg caggttctgg accattgcca gcttcatgat
421 catctacatc ctgggtttgg cgttgctgac aatggcgtcg tcggtgaagg ggctggtgcc
481 ggcgtgcgac ggaggagcgt gtcacccgac ggaggcgcag acgggggtgg tgttcttggc
541 gctgtacctg atagcgctgg gcaccggcgg gatcaagccg tgcgtgtcgt cgtttggcgc
601 ggaccagttc gacgagaacg acgaggggga gaagcggagc aagagcagct tcttcaactg
661 gttctacttc tccatcaaca tcggcgcgct ggtggcgtcg tcggtgctgg tgtacgtgca
721 gacgcacgtc gggtgggggt gggggttcgg catcccggcc gtcgtcatgg ccgtcgccgt
781 cgccagcttc ttcgtcggca cgccgctgta caggcaccag cggcccgggg gcagcccgct
841 gacgaggatc gcgcaggtgc tcgtcgcgtc ggcgaggaag tggggcgtcg aggtccccgc
901 cgacgggtcg cggctgcacg agacgctcga cagggagtcc ggcatcgagg gcagccgcaa
961 gctggagcac accgggcagt tcgcgtgcct cgacagggcg gcggtggaga cgccggagga
1021 caggtcggcg gcgaacgcgt cggcgtggcg gctgtgcacg gtgacgcagg tggaggagct
1081 gaagagcgtg gtgcggctgc tgccgatctg ggcgagcggg atcgtgttcg cgacggtgta
1141 cgggcagatg agcaccatgt tcgtcctcca ggggaacacg ctcgacgcca gcatggggcc
1201 gcacttctcc atcccggcgg cgtcgctctc catcttcgac accctcagcg tcatcgtctg
1261 ggtgccggtg tacgaccgcc tcatcgtgcc ggcggtgcgc gccgtgacgg ggcgcccacg
1321 cgggttcacc cagctgcagc ggatgggcat cggcctcgtc atctccgtct tctccatgct
1381 cgccgccggc gtgctcgacg tcgtcaggct gcgcgccatc gctcgccacg ggctctacgg
1441 cgacaaggac gtcgtgccca tctccatctt ctggcaggtg ccgcagtact tcatcatcgg
1501 cgccgccgag gtgttcacgt tcgtcgggca gctggagttc ttctacgacc aggctcccga
1561 cgccatgcgc agcatgtgct cggcgctgtc gctcaccacc gtcgcgctag gcaactacct
1621 cagcacgctg ctcgtgacca tcgttaccca tgtcaccacc cggaacggcg ccgtcgggtg
1681 gatcccggac aacctcaacc gcggccacct cgactacttc ttctggctgc tcgccgtgct
1741 cagcctcatc aacttcggcg tctacctcgt catcgccagc tggtacacct acaagaagac
1801 ggcggattca ccggacgaca aggccgagca cgccggagca aactgagcca cgaggtgaag
1861 ctgattatga catacaaggg ggaattgaac tgaattgtgg cgtgtgaatg tcagaatgtg
1921 tggggttcta aacaagttct tgggagataa aatggaaagg aaattagtgt cgtttgtgac
1981 cttc
//