LOCUS AK058723 1924 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-019-E11, full insert
sequence.
ACCESSION AK058723
VERSION AK058723.1
KEYWORDS oligo-capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1924)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1924
/clone="001-019-E11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1924
/db_xref="Osa1:LOC_Os01g01360"
/note="(Rice Genome Annotation Project) peptide
transporter PTR2, putative, expressed"
/note="mapping to R01-TIGRv4S1-000021F (Chr.1: short
arm=175453, long arm=177377, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 315 a 697 c 537 g 375 t
ORIGIN
1 atccaattcc agcagatgag aatgagatga ctagtactag tccccagatg cagatgagga
61 gaaacaagct ctcctcccac ttccaaggag atatcgatga tgatggtggt gttggtgttg
121 tggacatccg ggggtcgccg atggggtcgg cggagctggc gcgcaccggc gggtgggtgg
181 cggcggtctt catcttcggg aacgagatgg cggagaggat ggcctactac ggcctgtccc
241 tcaacatggt catcttcatg ttcaacgtca tgcaccgccc cttcgccgcc tccgccaacg
301 ccgtgaacaa cttcctcggc atctcccagg cctcctccct cctcggcggc ttcctcgccg
361 acgcctacct cgggcgctac tggaccatcg ccgccttcac caccctctat ctcctgggcc
421 tcgtggccct caccctctgc gccaccatgc ccgccctcca ggccccgggc caggacgagt
481 gcgacggctt cgccaagctg ctgggcaagt gccagcagcc gcacccctgg cagatggcct
541 acctctacgc cgcgctctac accaccgcct tgggcgccgc cgggatccgc ccctgcgtct
601 cctccttcgg ggcggaccag ttcgaggagc ggagcccggt gctggaccgc ttcttcaacc
661 tcttctacct ggccgtcacc gtgggcgcca tcgcggcctt cacgctgctg gtgtacgtgc
721 agaggaacca cgggtgggcg gcggcgttcg gggcgctggc gctggccatg gccgcatcca
781 acgcgctctt cttcatgggg acgccgctgt accgccaccg cgtgccgggg ggaagcccgc
841 tgacgagggt ggcgcaggtg ctagtggcgg cctacaggaa gcgtcacatc aagcacacca
901 cggaactgtt gtacgaggtg ggcggggcca agtcggcggt gcgcgggagc ggcaagatcg
961 agcacacgga ggagctgagg tggctggaca aggcggcggt gagggtggag ggccaagaag
1021 aaatcaataa cccatggcgt ctttgcactg tgacccaggt ggaggaggtg aagatcctgg
1081 tgcggctggc gccggtgtcg gcgtgcacgg tgatgctgag cgtggtgctg acggagttcc
1141 tgacgctgtc ggtgcagcag gcgtacaccc tcaacaccag gggcctcccc gtggcgtgca
1201 tgcccgtctt cccctgcctc gccatcctcc tcctcctcgc cctctactac agggccttcg
1261 ccccgctcgc ccgccgcctc accggccacc cgcacggcgc ctcccagctg cagcgcctcg
1321 gcctcggcct cctcctctcc accctctccg tcgcttgggc tggcctcttc gagcgctacc
1381 gccgcgccta cgccatccgc catggcttcc tcccgctctt cctcactccc atgccgggcc
1441 tcagcgccta ctggctcctc atccagtact gcctcatcgg tctcgccgag gtcttctgcc
1501 tcgtcgccct cctcgagttc ctctaccagg aggcccccga cgccatgcgc agcctcgcct
1561 ccgcctacgc cgccctcgcc ggcggccttg gctgcttctt agccaccgcc atcaacaccg
1621 ccgtcgactc catcaccggc gacatcgacg ccggacgccc ctcctggctc gcgcagaaca
1681 tcaacgtcgg caagttcgac tacttctact ggctcctcgc cgtgctcagc accatcaacc
1741 tcatcgtctt catctacttc gccaaagcct acaagtacag gatcaagccc cccaccaccc
1801 cacataacta gttcatagta tttctacacc actacagtct agtactagta gtatctgcta
1861 agtgacatta tattgatcaa tcaaacaaat taagggcatc caatatcttc ttttttattg
1921 atct
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