LOCUS AB601770 4381 bp DNA linear BCT 25-NOV-2010
DEFINITION Escherichia coli oqxA, oqxB genes for OqxA membrane-fusion
protein, OqxB integral membrane protein, complete cds, strain:
RE64.
ACCESSION AB601770
VERSION AB601770.1
KEYWORDS .
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 4381)
AUTHORS Sato,T. and Tamura,Y.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Toyotaka Sato
Rakuno Gakuen University, Laboratory of Food Microbiology and food
safety, Department of Health and Environmental Sciences, School of
Veterinary Medicine; 582 Midorimachi Bunkyoudai, Ebets, Hokkaido
0698501, Japan
REFERENCE 2
AUTHORS Sato,T.
TITLE oqxAB were found in fluoroquinolone resistant Escerichia coli
clinical isolates in Japan
JOURNAL Unpublished (2010)
COMMENT
FEATURES Location/Qualifiers
source 1..4381
/collection_date="2005"
/country="Japan:Hokkaido, Ebetsu"
/db_xref="taxon:562"
/isolation_source="isolate from canine feces"
/mol_type="genomic DNA"
/organism="Escherichia coli"
/strain="RE64"
CDS 1..1176
/codon_start=1
/gene="oqxA"
/note="component of RND-type multidrug efflux pump that
confers resistant to olaquindox"
/product="OqxA membrane-fusion protein"
/protein_id="BAJ34731.1"
/transl_table=11
/translation="MSLQKTWGNIHLTALGAMMLSFLLVGCDDSVAQNAAPPAPTVSA
AKVLVKSISQWDSFNGRIEAVESVQLRPRVSGYIDKVNYTDGQEVKKGQVLFTIDDRT
YRAALEQAQAALARAKTQASLAQSEANRTDKLVHTNLVSREEWEQRRSAAVQAQADIR
AAQAAVDAAQLNLDFTKVTAPIDGRASRALITSGNLVTAGDTASVLTTLVSQKTVYVY
FDVDESTYLHYQNLARRGQGASSDNQALPVEIGLVGEEGYPHQGKVDFLDNQLTPSTG
TIRMRALLDNSQRLFTPGLFARVRLPGSAEFKATLIDDKAVLTDQDRKYVYIVDKDGK
AQRRDITPGRLADGLRIVQKGLNPGDSVIVDGLQKVFMPGMPVNAKTVAMTSSATLN"
CDS 1200..4352
/codon_start=1
/gene="oqxB"
/note="component of RND-type multidrug efflux pump that
confers resistance to olaquindox"
/product="OqxB integral membrane protein"
/protein_id="BAJ34732.1"
/transl_table=11
/translation="MDFSRFFIDRPIFAAVLSILIFITGLIAIPLLPVSEYPDVVPPS
VQVRAEYPGANPKVIAETVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDP
DQAQVQVQNRVAQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYA
TLKVKDELARLPGVGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVS
AGQLGAEPLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSG
SYALRSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTV
FVRDSIRAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFS
LNTLSLFGLVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALV
LCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDL
PTRLIDRLFGWIFRPFNRFFLRSSNGYQGLVGKTLGRRGAVFAVYLLLLCAAGVMFKV
VPGGFIPTQDKLYLIGGVKMPEGSSLARTDAVIRKMSEIGMNTEGVDYAVAFPGLNAL
QFTNTPNTGTVFFGLKPFDQRKHTAAEINAEINAKIAQIQQGFGFSILPPPILGLGQG
SGYSLYIQDRGGLGYGALQSAVNAMSGAIMQTPGMHFPISTYQANVPQLDVQVDRDKA
KAQGVSLTDLFGTLQTYLGSSYVNDFNQFGRTWRVMAQADGPYRESVEDIANLRTRNN
QGEMVPIGSMVNISTTYGPDPVIRYNGYPAADLIGDADPRVLSSSQAMTHLEELSKQI
LPNGMNIEWTDLSFQQATQGNTALIVFPVAVLLAFLVLAALYESWTLPLAVILIVPMT
MLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARELEIQGKGIMEAALEA
CRLRLRPIVMTSIAFIAGTIPLILGHGAGAEVRGVTGITVFSGMLGVTLFGLFLTPVF
YVTLRKLVTRRKPVQEDLPA"
BASE COUNT 832 a 1287 c 1368 g 894 t
ORIGIN
1 atgagcctgc aaaaaacctg gggaaacatt cacctgaccg cgctcggcgc gatgatgctc
61 tcctttctgc tcgtcggctg cgacgacagc gtcgcacaga atgctgcgcc tcccgccccg
121 acggtcagcg ccgctaaggt gctggtgaag tcgatcagtc agtgggatag ttttaacggt
181 cgcattgaag cggtggagag cgttcagctt cgccctcgcg tctcgggata cattgataaa
241 gtgaattaca ctgacggcca ggaggtgaaa aagggccagg tgctgttcac gatagatgac
301 agaacctatc gcgccgcgct ggagcaggcg caggcggcgt tggcaagagc caaaacgcag
361 gccagcctcg cgcaaagcga ggcgaaccgc accgataaat tagtccatac caacctcgtc
421 tcccgtgaag agtgggagca gcgccggtca gccgcggttc aggcgcaggc cgacattcgc
481 gccgcgcagg cggcggtgga tgccgcgcag cttaacctcg acttcaccaa agtgaccgcc
541 cctattgacg gccgcgccag ccgggcgctg atcaccagcg gtaacctggt caccgcgggc
601 gacaccgcca gcgtgctcac caccctggtc tcgcaaaaga cggtgtacgt ctactttgac
661 gtcgacgagt caacctacct ccactatcaa aacctcgccc gccgcgggca aggcgcgtcc
721 agcgataatc aggcgctccc ggtggagatt ggcctggtgg gcgaggaggg ttacccccac
781 cagggcaaag tggattttct cgataatcag ttaacgccga gtaccggcac catccgcatg
841 cgtgcgctgc tggataactc gcagcgtctg ttcacgccgg ggctgtttgc ccgcgtgcgt
901 ctgccgggca gcgcagagtt caaagccacg ctgatcgacg acaaagcggt actgaccgat
961 caggatcgta aatacgtcta tatcgttgat aaagatggta aagcacagcg ccgcgacatt
1021 accccagggc ggctggcaga cggtttacgc atcgttcaga aggggttgaa tcctggggat
1081 agcgtcatcg tcgacggctt acaaaaagtg tttatgccgg gtatgccggt taacgccaaa
1141 accgttgcca tgacctccag cgccaccctt aactgatccc taatcagaga atccaagaca
1201 tggacttttc ccgctttttt atcgacaggc cgattttcgc cgcggtgctg tcgattttaa
1261 tttttatcac cgggttaatc gctatcccac tgctgccggt gagcgaatat ccggatgtcg
1321 tcccgccgag cgtccaggtg cgcgcggagt atcccggcgc caacccgaaa gtgattgccg
1381 agaccgtggc gacgccgctg gaggaagcga tcaacggcgt tgaaaacatg atgtacatga
1441 aatcggtcgc cggctccgac ggcgtgctgg tcaccaccgt caccttccgc ccgggtaccg
1501 acccggatca ggcgcaggtt caggtgcaga accgcgtcgc gcaggccgaa gcgcgtctgc
1561 cggaggatgt acgccgtctg gggatcacca cccagaagca gtctccgacg ctgaccctgg
1621 tggtgcatct gttctccccc ggcgggaagt acgactcgct gtatatgcgc aactacgcca
1681 cgctgaaagt gaaggatgag ctggcgcgcc tgcccggcgt cggccagatc cagatttttg
1741 gctccggtga atatgcgatg cgcgtctggc tggatcccaa taaggtcgct gcccgcggtc
1801 tgacggcctc ggatgtggtg acggcgatgc aggagcaaaa cgtccaggtg tctgccggac
1861 agcttggcgc cgagccgctg ccgcaggaga gcgatttcct gatctccatt aacgcccagg
1921 gccgtctgca taccgaagaa gagtttggca atatcattct gaaaacggcg caggatggct
1981 cgctggtccg cctgcgcgac gtggcgcgca tcgagatggg ttccggtagc tatgcgctgc
2041 gctcccagct caacaataag gatgcggtcg ggatcggtat cttccagtca cccggcgcta
2101 acgccatcga tctgtcgaac gcggtacgcg ccaaaatggc cgagctggcc acccgcttcc
2161 cggaagatat gcaatgggcg gcgccgtacg acccgacggt tttcgtccgc gactccatcc
2221 gcgcggtggt gcagacgctg ctggaggcgg tagtgctggt ggtgctggta gtgatcctgt
2281 tcctgcagac ctggcgcgcg tcgattatcc cgttgatcgc tgtgccggta tcggtggtgg
2341 gtaccttcag cattctctat ctgctgggct tctcgctgaa taccctgagc ctgttcgggc
2401 tggtactggc tatcggtatc gtggtggacg acgccatcgt ggtggtggag aacgtcgagc
2461 gtaatatcga agaggggctt gcgccgcttg ccgcggcgca tcaggcgatg cgtgaggtct
2521 ccgggccgat tatcgccatt gcgctggtgc tgtgtgcggt gttcgtgccg atggcgtttc
2581 tctccggggt caccggccag ttctacaaac agttcgcggt gaccatcgcc atctcgacgg
2641 tgatctcggc catcaactcg ctgacgctct ccccggcgct ggcggccctg ctgttaaagc
2701 cgcacggcgc gaagaaagac ctccctaccc ggctgatcga tcgcctgttt ggctggattt
2761 tccgtccgtt taaccgcttt ttcctgcgca gctcgaacgg ctatcaggga ctggtaggca
2821 aaacgcttgg acgccgtggc gcagtgtttg cggtgtacct gctgctgctc tgcgccgctg
2881 gggtgatgtt taaagtcgtc cccggcgggt ttattcccac ccaggataag ctgtatctca
2941 ttggcggcgt gaagatgccg gaagggtcgt cgctggcgcg caccgacgcg gtgatccgca
3001 aaatgagcga gatcgggatg aataccgaag gggtcgacta tgcggtcgct ttcccggggc
3061 ttaacgcgct gcagttcacc aacacgccga ataccgggac ggtctttttt ggcctgaaac
3121 cgttcgacca gcgcaaacac acggcggcgg aaattaacgc ggagatcaac gccaaaatcg
3181 cgcaaatcca gcagggcttt ggcttttcca tcctgccgcc gccgatttta ggtctgggtc
3241 agggttccgg ctactccctg tacatccagg atcgcggagg gctgggctat ggcgcgctgc
3301 aaagcgcggt gaatgcgatg tccggggcga ttatgcagac gccggggatg cacttcccga
3361 tctcgactta ccaggctaac gtgccgcagc tggacgtgca ggtcgatcgc gataaggcga
3421 aagcgcaggg ggtatcgcta accgatctgt tcggtacgct gcagacctat ctcggctcgt
3481 cttatgtcaa tgactttaac cagttcgggc gtacctggcg cgtgatggcc caggctgacg
3541 gaccataccg cgagagcgtg gaagatatcg ccaatctgcg cacccgcaat aatcagggcg
3601 aaatggtacc gatcggcagt atggtgaata tcagtaccac ctacgggccg gatccggtga
3661 tccgctacaa cggttatccg gcggcggacc tgattggcga tgccgatccg cgggtcctct
3721 cttcttcgca ggcgatgacg catctggaag agctgtcgaa gcagatcctg ccgaatggga
3781 tgaatattga gtggacggat ctcagcttcc agcaggccac ccagggcaac acggcgctga
3841 tcgtcttccc ggtggcggtg ctgctggcat tcctcgtact ggccgcgctg tatgaaagct
3901 ggaccctgcc gctggcggtg atccttatcg taccgatgac gatgctctcc gcgctgtttg
3961 gcgtctggct gaccgggggc gataacaacg tcttcgtgca ggtgggtctg gtggtcctga
4021 tgggcctggc ctgtaaaaac gccattctga tcgtcgagtt tgcccgcgag ctggagatcc
4081 aggggaaagg catcatggaa gcggcgctgg aggcatgccg cctgcgtctg cgcccgatcg
4141 tgatgacctc catcgccttt atcgccggga ccattccgct gatcctcggc cacggcgcgg
4201 gggcggaagt ccgcggcgtc accgggatca cggtgttctc cgggatgctg ggcgtgacgc
4261 tcttcggtct gttcctgacg ccggtgtttt acgtgacgct acggaaactg gtgacccgca
4321 ggaagccggt ccaggaggat ctgcccgcct agttaatgcg cttttttaaa gcgggcgatc
4381 a
//