LOCUS AB601601 1086 bp cRNA linear VRL 18-DEC-2014
DEFINITION Influenza A virus (A/Yamagata/163/2009(H1N1)) HA gene for
hemagglutinin, partial cds.
ACCESSION AB601601
VERSION AB601601.1
DBLINK BioProject:PRJNA37813
KEYWORDS .
SOURCE Influenza A virus (A/Yamagata/163/2009(H1N1))
ORGANISM Influenza A virus (A/Yamagata/163/2009(H1N1))
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae; Influenza A virus.
REFERENCE 1 (bases 1 to 1086)
AUTHORS Matsuzaki,Y. and Mizuta,K.
TITLE Direct Submission
JOURNAL Submitted (19-NOV-2010) to the DDBJ/EMBL/GenBank databases.
Contact:Yoko Matsuzaki
Yamagata University Faculty of Medicine, Department of Infectious
Diseases; Iida-Nishi 2-2-2, Yamagata 990-9585, Japan
REFERENCE 2
AUTHORS Matsuzaki,Y., Sugawara,K., Nakauchi,M., Takahashi,Y., Onodera,T.,
Tsunetsugu-Yokota,Y., Matsumura,T., Ato,M., Kobayashi,K.,
Shimotai,Y., Mizuta,K., Hongo,S., Tashiro,M. and Nobusawa,E.
TITLE Epitope Mapping of the Hemagglutinin Molecule of A/(H1N1)pdm09
Influenza Virus by Using Monoclonal Antibody Escape Mutants
JOURNAL J. Virol. 88, 12364-12373 (2014)
REMARK DOI:10.1128/JVI.01381-14
COMMENT
FEATURES Location/Qualifiers
source 1..1086
/collection_date="2009-08-06"
/country="Japan:Yamagata"
/db_xref="taxon:929430"
/host="Homo sapiens"
/mol_type="viral cRNA"
/note="lineage: swl"
/organism="Influenza A virus (A/Yamagata/163/2009(H1N1))"
/segment="4"
/strain="A/Yamagata/163/2009"
CDS 1..>1086
/codon_start=1
/gene="HA"
/product="hemagglutinin"
/protein_id="BAJ34807.1"
/transl_table=1
/translation="MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVT
HSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSSS
DNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKS
FYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADAYVFV
GTSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMER
NAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATG
LRNVPSIQSRGLFGAIAGFIEGGWTGMV"
BASE COUNT 376 a 217 c 239 g 254 t
ORIGIN
1 atgaaggcaa tactagtagt tctgctatat acatttgcaa ccgcaaatgc agacacatta
61 tgtataggtt atcatgcgaa caattcaaca gacactgtag acacagtact agaaaagaat
121 gtaacagtaa cacactctgt taaccttcta gaagacaagc ataacgggaa actatgcaaa
181 ctaagagggg tagccccatt gcatttgggt aaatgtaaca ttgctggctg gatcctggga
241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
301 agttcagaca atggaacgtg ttacccagga gatttcatcg attatgagga gctaagagag
361 caattgagct cagtgtcatc atttgaaagg tttgagatat tccccaagac aagttcatgg
421 cccaatcatg actcgaacaa aggcgtaacg gcagcatgtc ctcatgctgg agcaaaaagc
481 ttctacaaaa atttaatatg gctagttaaa aaaggaaatt catacccaaa gctcagcaaa
541 tcctacatta atgataaagg gaaagaagtc ctcgtgctat ggggcattca ccatccatct
601 actagtgctg accaacaaag tctctatcag aatgcagatg catatgtttt tgtggggaca
661 tcaagataca gcaagaagtt caagccggaa atagcaataa gacccaaagt gagggatcaa
721 gaagggagaa tgaactatta ctggacacta gtagagccgg gagacaaaat aacattcgaa
781 gcaactggaa atctagtggt accgagatat gcattcgcaa tggaaagaaa tgctggatct
841 ggtattatca tttcagatac accagtccac gattgcaata caacttgtca gacacccaag
901 ggtgctataa acaccagcct cccatttcag aatatacatc cgatcacaat tggaaaatgt
961 ccaaaatatg taaaaagcac aaaattgaga ctggccacag gattgaggaa tgtcccgtct
1021 attcaatcta gaggcctatt tggggccatt gccggtttca ttgaaggggg gtggacaggg
1081 atggta
//