LOCUS AB510199 3704 bp DNA linear PLN 10-APR-2010 DEFINITION Oryza sativa Japonica Group Sdr4 gene for putative zinc finger protein Sdr4, complete cds. ACCESSION AB510199 VERSION AB510199.1 KEYWORDS . SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3704) AUTHORS Sugimoto,K., Takeuchi,Y. and Yano,M. TITLE Direct Submission JOURNAL Submitted (22-JUN-2009) to the DDBJ/EMBL/GenBank databases. Contact:Kazuhiko Sugimoto National Institute of Agrobiological Science, QTL Genomics Research Center; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan URL :http://www.nias.affrc.go.jp/qtl/ REFERENCE 2 AUTHORS Sugimoto,K., Takeuchi,Y., Ebana,K., Miyao,A., Hirochika,H., Hara,N., Ishiyama,K., Kobayashi,M., Ban,Y., Hattori,T. and Yano,M. TITLE Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice JOURNAL Proc. Natl. Acad. Sci. U.S.A. 107, 5792-5797 (2010) COMMENT FEATURES Location/Qualifiers source 1..3704 /chromosome="7" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" CDS 2129..3160 /allele="Sdr4-n" /codon_start=1 /experiment="QTL cloning" /function="pre-harvest sprouting resistance" /gene="Sdr4" /product="putative zinc finger protein Sdr4" /protein_id="BAI79301.1" /standard_name="Seed Dormancy 4" /transl_table=1 /translation="MAMVQPVDMAVKANEIMARFRPIAPKPVLPAAAAGVTGGGDGAA AVAATNRVLCQLQSRPCRARKRGRPSVVPPVSPPAGAKRKRAPAYPVPVAPLRCAAVA TATRARVSVVVVPAPESAGGVSALAPVSPSAGDSTRLSPTVVEVEDEDEERGVVLVER DLLRKLLEPRKLLEPRAVRPVGSTIHVESVHIDVGRTTAAAAAAAPKTAEEVEAELES DSLPAVVSDSSNRVRLVNDAYKRMVGQPECPWLDAVATAASRRISGEVALVVSEPAAA AAALPETCKGFSCSAKIAWERDGKWSSVHAPCDVTRLQCESRDYVFAWRFRAAGDECN THRRAAGDA" BASE COUNT 772 a 1057 c 1147 g 728 t ORIGIN 1 cacctattta caactccaag tctaactata accaaataag actggtatat tcgacaccta 61 ttctaaaacg tgagttatta ttgcaacggc acatgtggtg gggcgcgtgg taaggacggc 121 acggaggcgc gggtagcgcc cgacgcgggg cattttccaa aaaagatgtc taaggattac 181 gcgagaccgt gagagtgcgt acgtgcaaaa tcagggcgga atttctctcc cgtgtctgcc 241 acggccaccg gtgcattgca tatgcgcaca cgaggagcaa agctcgcgac ctcgcgcgtt 301 gcactgccgc actgaacgat cgacggacga cggcagcgcg cggccgggcg tcgcgcgctg 361 taccgcagcg cgcaccgcac caactgaact ctgcaaggtg caagcaacta gcgtacggcg 421 tagcgtcgcg ctcgcgcggc cgcgcctcgc ctcgcgacgt acgcgcttgc gaattgaaag 481 ccttcctttt cgtccgttcc ctgagaccct gacccgcgcc cacccactcg ccaagcggga 541 gcgagacgga gcggcgcctg cacccgcgcg cccgccaatg gcagggcggc cactcgtcgc 601 gcggcgttgc tacccgctcg ccacggcacg cagcacatgc cgtgcatgca aaagggtggg 661 ttcttataaa aaaaaagaga gagtaagaaa cggagctgta gcgtcggtcc aaaagtttgt 721 ttctcgagca gggagatcga agagagaagc atttgccctg ctgctgctcc ggctggccgg 781 tttaaattcg tgctgctgca ttcggccggg tagctagccg gcccgtggtt gggctccagt 841 aggacacgcg acatgcatgc tccacgtgtg acgctttgcc tgctgtttcg tgtaccgcag 901 ctgcatgtat gcgtaaagtt tttctactac tagtttattt tttattgggc ggacaggtcg 961 tcacagtaga gcatttaccg tcgagccgcg tactttttgg aacagaagag ttagatccac 1021 agtgttttac atatccagtc gatttatgtt tgggtttggg aaatttcacc ggtgtaaaaa 1081 gcttctcact tcatcgggca ccgtcttctg taaatttttt tcgatatgaa ctttgataaa 1141 ttttgctcct cgtccaggcg aagaaactcc ggctttggct ataggaaacg gatggtgcat 1201 gcatctagtc ccgacgagcg acgtaagcaa gcgttcgccc ggtcttgatg tgtgccacgt 1261 gctggagacc gtcgtcacca gcttttaatt catcggaaag atagcaaagc gtttgtcgtc 1321 gtggtttaca ttgcatcgtc tggtttccct ccgagatttt gtatgtacat gcatgtatag 1381 tctcgtagac catacatgac cagcaaaacc acgtgcggat atatcaactt ttaggcggtt 1441 ttgtgctggc tgaaacaata tgtacctcag ctgagaagta atctcgaaag catgagtaca 1501 ccaccggagt cggagtgtac atgcatgcat gcacggcaag gtatgaccaa aaagcagttt 1561 tgacgcagat tgatcattcg atctggtagt gaaaaacaaa aaaaaaaaaa ggtaaagtgg 1621 tgtgtcccgg tgtccgccta tacgctaaac ttaccgtggt gctagagtac aagcgagccg 1681 gttggtggag gcgagcgcaa aagcgccaca cggccttctg ccaatgaggc ctcacgccgt 1741 cacgcggggc acgccagcca gccagtgacc gcggcggaac gcgccacggg ggacgatgcg 1801 cccgaggggg gcggacgccg catgcagcgc aacgcgagta cgcgacctcg cctcacctca 1861 cctccaccat acgcctcgcg ctgctggctg gaatccaccg gagcgcgcgg cccgcgactc 1921 cgctccgcct acgtgtcggc cgcgtccccg cgcggtcgcc cacgtacccc gccccgccct 1981 cccacgtgcc cctcccccct gcgcgcatcc gattggccgc ccacgccttc ttaaccccac 2041 caccccacca ctcgggcccc aacgcatccg ttcaccacct gcgagagcga gcgtaccgtt 2101 cgttcgttcg tccggtgtac gtctcgccat ggccatggtg cagccggtgg acatggccgt 2161 gaaggccaac gagatcatgg cgaggttcag gcccatcgcg cccaagcccg tgctgccggc 2221 ggcggcggcg ggggtgacgg gtggtggtga cggtgctgcg gcggtggcgg cgacgaaccg 2281 cgtgctctgc cagctgcaga gcaggccgtg ccgggcgcgg aagcgggggc ggcccagcgt 2341 agtgccgccg gtgtccccgc cggcgggggc caagaggaag agggcgccgg cgtacccggt 2401 ccccgtggcg ccgctccggt gcgcggcggt ggccacggcg acgagggcgc gcgtgtcggt 2461 ggtggtcgtc ccggccccgg agagtgcggg cggggttagt gcgctggcgc cggtgtcgcc 2521 gagtgccggg gactcgacga ggctctcgcc gacggtggtg gaggtggagg acgaggacga 2581 ggagaggggc gtggtgctcg tggagcgcga cctgctgcgg aagctgctgg agccgcggaa 2641 gctgctggag ccgcgcgcgg tgcgccccgt gggctccacc atccacgtcg agtcagtcca 2701 catcgacgtc ggccgcacca ccgccgccgc cgccgcagcc gccccgaaga cggcggagga 2761 ggtggaggcg gagctggagt cggactccct cccggcggtg gtctcggact ccagcaaccg 2821 cgtccggctg gtgaacgacg cgtacaagcg aatggtgggg cagcccgagt gcccgtggct 2881 cgacgccgtg gccaccgccg cgtccaggag gatcagcggc gaggtggcgc tggtagtgtc 2941 cgagccggcg gcggcggcgg cggcgctgcc ggagacatgc aaggggttct cgtgctcggc 3001 caagatcgcg tgggagcgcg acggcaagtg gtcatccgtc catgcaccgt gcgacgtcac 3061 ccggctgcag tgcgagtcga gggactacgt cttcgcctgg aggttccgcg ccgccggcga 3121 cgaatgcaac acccaccgcc gcgccgccgg cgacgcgtga cgacgtgatg catcaagccg 3181 gagcaaactt tagtagtgca tagatgtaat cgtgttaagg tgcaatgtta ctagtagtag 3241 caaactagat cggctgcttc ctcttttgcg aagcttatag gatgcaaggc caggttctaa 3301 agtatatatg atgttgaccg gagaatgcaa gggaaaattg taacttttgc tttagtgaga 3361 tttgtttgtt ctcatgtagt ttagcactaa tgatccattt gacagcgaca agtgattgcg 3421 tctgcatgca tggacatccc aggatagatg catgcatgga caacccaggt tagacaaatg 3481 cgtggtcgca atcacattat ccgtgtcgcg ttatcaaaca aaataaagaa aaacgtcttc 3541 actgtcgtgt tccaagagtt gagagcaaac cagggcagaa caacacttaa gttttgcttt 3601 aacaacctaa gcaaacaggt aaaggatctt tatgaaatga tgtggaagga taatggtaaa 3661 caattttagt acacaggaaa tcattctatt tgatcacagt gcac //