LOCUS AB036785 6929 bp DNA linear PLN 15-FEB-2008
DEFINITION Oryza sativa Japonica Group Nipponbare OSCKA2 gene for casein
kinase II alpha subunit, complete cds.
ACCESSION AB036785
VERSION AB036785.1
KEYWORDS .
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 6929)
AUTHORS Takahashi,Y., Sasaki,T. and Yano,M.
TITLE Direct Submission
JOURNAL Submitted (11-JAN-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Masahiro Yano
National Institute of Agrobiological Resources, Rice Genome
Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
URL :http://www.staff.or.jp/
REFERENCE 2
AUTHORS Takahashi,Y., Shomura,A., Sasaki,T. and Yano,M.
TITLE Hd6, a rice quantitative trait locus involved in photoperiod
sensitivity, encodes the alpha subunit of protein kinase CK2
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 98, 7922-7927 (2001)
COMMENT
FEATURES Location/Qualifiers
source 1..6929
/chromosome="3"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="genomic DNA"
/organism="Oryza sativa Japonica Group"
CDS join(1097..1182,2549..2678,2759..2815)
/codon_start=1
/gene="OSCKA2"
/product="casein kinase II alpha subunit"
/protein_id="BAB21588.1"
/transl_table=1
/translation="MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGK
YSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIV"
misc_feature 2813..2815
/note="premature stop codon"
polyA_site 6462
BASE COUNT 1991 a 1275 c 1347 g 2316 t
ORIGIN
1 cacactattg gcctggcctt agtgccagaa cctgtttatt tcttctgttt tatagtctga
61 tgcatttttg ttaatggaaa tggagggcct ttttcccttc gataaaaaaa atgtataaga
121 ttattagtta attatggtag tattgaaaaa tataccacga taaaaaaact taaaatcaaa
181 ttaaaattaa gtttcaacat ttatatttta gctacgggtg ataagtcaaa acacaaacaa
241 cggtctttgt acgtaagtct ttttcaaaac ttgtggtaaa cattctccgt tcagttatta
301 atatttgatg tttaggacaa gatccgatca aacttctaaa attctaacaa atcaattcta
361 tattaaatta agtttatgaa gcgctataag cttgtgattt tatgatagca cttgttgaga
421 taaatatatg tatatctttt atcttatctt taaactaagt agaggtattt gttaaattat
481 tgatgatcag aaatttaaaa agttcgacca tatcttgtac tagtactaaa cgtaaaatat
541 ttttgactaa aggaagtaat taaaatttaa gaggcaaaat tacgtgtgaa tttgagaaga
601 cttccaattc aacagctcaa tgatcgggac acattcttaa aaaagaaaaa aaagaaacaa
661 aaaagatccg gacacgcatg cgcaaatgga gctttcatag gcagaaggcg taatcaactg
721 gaaggcgtct tctcctggag ggaaaggtcg ggcccacgta agggaacaaa accacctgtc
781 agtgaccaaa agccagcaga ttccagagtc gccgtcccac gccgcctcta tctatctcca
841 cgtgaaataa aaaaaaaaca aagctcccga aaatattctc tctcccccac ccccgaaacc
901 ctagcgcgac ctcgccgccg gcaatggccg catgaccgat gcgcctccgc cgaggagccg
961 cccgcaccca cccagcagca gcgtcgccgt gcccgccgcc gcggcggcag tgatcgcagc
1021 cgccctcgcg tcctccttcc tcgccctgct gcagccgccc cggcgcgccc cggtcgccgc
1081 gggatccagg gtcggcatgt cgaaggcgag ggtctacgcc gacgtcaacg tgctgcgccc
1141 caaggagtac tgggactacg aggcgctcac cgttcaatgg gggtaggtag cacagccagc
1201 cagctgacgt caccttcctg agccccctga tcagcggccg tagcttgtat tctccagatt
1261 tagttcgcga tccgtatccc gtacacctgg gctgggtttg cttattggga ttaggttgga
1321 ttattgggtt atgcgtaggt ttgcttgtgc ctgtagattt tggttttggt cagggaattg
1381 ggaatttatt gtagcttgaa ggttagattg aattgcttct gtttctatta ggacgaactc
1441 aataccgaag actgctttgg tagttttaca tgtttgtact ataggagtag gggacacatg
1501 tttaccgaat ggttgaagaa attgttatga atttgcaagg ttatgatttt aattttggaa
1561 tcaatctcac tatatcttcc ttttaaagtt gatactagtg ttgttcagtt aagagccttt
1621 gtttgattgt gaatggcaag ctgtaggtat tgatcctatt tttgttgggg ataaaatcta
1681 agttaaggca aaattaggca gttttatgtt taatcattgg aacaaagtaa gttggtgatg
1741 ggtttctggg tgtttctttt gcatcatctg ataaccaaga ttgatgagta aagcataact
1801 tggtagtata gtgctttggg cctaatcttc tttagcactg aacattcacc aagttctatg
1861 cttttatgta atctcaaatt taacattgtg ttttccttca ctcaccctag aatatactac
1921 ctgaaagcaa tcaatgaaat caaatataac ttcgtttcta cctatatgat tgtaacatgc
1981 tgagtaatat ggtgccaaac aactcaacac atataatact gtccttaaca acccatcttc
2041 ttttccctgt agaagttaca gccctagtat attctgtaca tgtcatgcta cctagatgac
2101 agttgaggcc tggtaggagt gtgcttgttt aattttggta ctccaaaagt gcactgtttt
2161 tctcaatctg actctgttac cagttgtgtt tcctctagat gtattcctta tctatggtga
2221 attattaaat aagttgtctg gtgacaaaaa aaaaagaaaa ataaaagaag agatgaacaa
2281 tatgtagctc attgatgatc ccttgtctgc ttgaacttta tgagaaacta tagaaagcag
2341 tggtgttttc cctgacctga tgttaaatac ttgttaagaa ttgagctttc ttcgaagttt
2401 gttcagttta cacaccaaca ctaagaattg ccatatatct cccatctttt gtccatttaa
2461 ttcttgttac ctcaagtcat tgagggacct ggcagcatgt tatgacttac acaatacctc
2521 gctaactatt atggtgcatc tttaacagtg agcaggatga ctatgaagtt gtcaggaaag
2581 ttggaagagg taaatatagt gaagtctttg aaggcatcaa tgttaacaac aatgagaaat
2641 gcatcatcaa gatactcaag cctgtgaaga aaaagaaggt atttaattga tcttattgac
2701 tgtttttttt aattgctagt gttgaagttc ttaacctacc tttcatatgt ttgaacagat
2761 caaaagggag attaaaatac ttcagaatct ttgtggaggt ccaaacattg tgtagcttct
2821 tgatattgtc agagatcaac attctaagac tcctagcttg atctttgaat atgtcaacaa
2881 tacagacttc aaagtgctgt accccacgtt gacagattat gatatccgct actacatata
2941 tgagctactc aaggtcttca ttgagccttc attgtcatcc ctatttattt actctattca
3001 gtaaaacatc ctgttctgtg gatctgtaga atgatgtatc tcttatagaa attgttttca
3061 caattacttt cctattatgt gaagatccaa ctaaacacac ttgtaatata tcctagacaa
3121 atatcaccat tctcactgct tgcaagttgc aacatatctt taattattta tgtatatatg
3181 aacttgatta ttttctaaag ttacatggct taaaacttgt cacaatctca agcagtttat
3241 ggatcagttt tgttttgagt tttaattata gtagcatctt gcacttcata atgtacagat
3301 gacaaaagaa ttcctgaatt gcatatgtgc tataatggtt tatgatctgg gattttgaag
3361 agaagtgtcg ttttatacat ttctaagttc agcactatgt tggtgttaag aattcagcca
3421 tcaatgggca tcttaacgta tgtgctaggt catgccttct atccatgggt aataaactgt
3481 taacacacag tgtgtgtttt tcatatcgat attcttagcc aagaacagta gcatcatttg
3541 cccttaatcc tgtgtgttaa gtttgtttaa agaatctagt tgattttctt tacaatattt
3601 tccttctgtt tatggcccca ggcattagac tactgccatt cacaaggcat tatgcatcga
3661 gatgtcaagc cccacaatgt tatgatagat catgagctcc gaaaacttcg attgatagac
3721 tggggcctgg ctgagttcta tcatccaggg aaggaatata atgttcgtgt tgcttcaagg
3781 ttggtgtagt tacaagcaaa ctacttgttt ggttatgatt ttcttgcttt tttattgaat
3841 tggattgcac cctgataatc acttgaatca tgagaggaag ctaacttaag aaggtagcat
3901 ccctgttttg cagtttgttt gctaacttgg ctctagaagc aatacgtgaa ccgataaatt
3961 acttggtttg aattcactgc tactgttgaa gtctgaattg cctagtggtc cttttgcaac
4021 attaatgtta cgaaatgctg aaagttaagc aatgaagctg tttaccctta aacaactaag
4081 tttacgtctg aaaaaaaggc aataaaacag ataccattac tagcccttta ttatttttgt
4141 aagcatgtta tcactggagt atatcatgca attattgggt gtacgtctga aaaaaggcaa
4201 taaaacagat accattacta ggactttatt atttttgtaa gcatgttatc actggaatag
4261 atcatgcaat tattgcttac taatgcgtca attctttgct catttttgct ttggtacctg
4321 agttgagcat atggtttctc gtttttattc aggtatttca aggggcctga gcttcttgtt
4381 gatttgcaag attatgatta ttctttggac atgtggagcc ttggttgcat gtttgctggg
4441 atggtatgtg tggctgtaaa aaatatcgcc tgtctaggtc aatgtctgga tatctaatgt
4501 actattgtat tgataataag tctgacgtct gaactcagtt aactgtatgc tatgatgcag
4561 atattccgca aggagccatt cttctatggt catgataacc atgatcaact tgtcaagatc
4621 gcaaaggtaa gtcccagttt gattctggcc tctcacattt ctcaagggaa aaaaaatggt
4681 ttggtatgcc tgataaaatg tttagttatg caactcgtgt tttggactgg ttggtataca
4741 tgttttactt tgtttctaaa aaaaattgct gtttgtgctc cttttagctt agtactcata
4801 tgttattctg acatataagc agtgtgatgt cgtcaaaata aattatgttc atttgtaaat
4861 tgtgattttt gaagttctta tttgttgctc tcgaactctt actaggacgg ttattggcat
4921 ttaaagatgt tttaagcatc caataatgcc tcgagtgtgt gtcagcagtg ttgattcgct
4981 tgtcatcagt tgaaaactaa gtacttttcc agcattatgc tattgatatc ggactaaggc
5041 agatgtcata atgtactttg atatctatgc aaattttatt cttgatctgt tttagtggtt
5101 tatataagtg cttattttgg aataacaata aaacagctat atgtgaaata ttggtatctg
5161 atccatgtgt tttccccatc attctcaggt acttggaaca gaagcactaa atgcttattt
5221 gaacaagtac catattgagc ttgatcctca gcttgaagct cttgttggga ggtacgttgc
5281 catgctttta gatattggtt ttgaacggga agattcagaa gtataacact tacatataca
5341 tatgcaggca tagtagaaaa ccatggtcga aattcattaa tgctgataac caacatctag
5401 tatctcctga ggtttgtcaa tggctcttgc tgtttccaaa tcaaccttaa gataatgttt
5461 gcttaacatc atgcttgtac atttgtaggc tgtagatttt cttgataagc ttctacgtta
5521 tgatcaccaa gataggctca ctgcacgtga agctatggta agtctacccc gacagataat
5581 atttgttaca ttccaagaag atactgattt tgtttgactg gatatttcct atttatgtaa
5641 cagtattgac tgttcactga gattgttagt ttattgctga atattttagt atatatcctc
5701 ctttttagtc ataagaatta catcaatgat gtcataatag tactttcatc ttcctatcct
5761 atcacacctc tgttcaattt ttattttagg catattctgt ttcacttatt gctctgtatt
5821 atgacaatat cataaaacat tttcctgacc ctcaaccaaa aatagttggc aagttatgca
5881 tttgtatagg tacacttcaa ctagggatgc aagtggagcg ggcaatcggt tattttttgc
5941 ctgtttatct caattctagt tcaattgttg taggtattta tgcaggtaac aggattgctt
6001 actcgcatcg ctaacttcaa cccaatataa tttggcaaat ggtgcatttg gcaatagata
6061 gaaacccttc aaatttctct gccacattgg cttttgtatg caatgaacaa cgtttcatct
6121 tcacatagta tctggccagt tgtaggagga acaaattgtt atttgattac tcttggactt
6181 ctcaaattaa tgccataatc atgaatactt gcaggcacat ccgtacttcc tccaagtgag
6241 agctgcagaa aatagcagag cacgaccaca atgatcttgt gtacctgcta aaatgatgat
6301 ccagctgatg atccacgacg gtactacttt gagtttgtgt gaacgatcgt ggaatgtgct
6361 tgtagccttg catttgtaaa ctgtaattca ctccgttggt tgcgtttgat gaatgccgtg
6421 acatgcacat aattatttat ttctgtaatg ttttaccata acaacgatta agatgcaaca
6481 ggtacctgta tgacagcatg agccttgtta agcttgtttc gaaatgaggc cgaagtgcat
6541 gtcttagctc ggttcaaatt actaaaatta actctagtag taaatattgg ggccaaaatt
6601 tggctgctta tttcaccact aacttatttg gacctttaac gggccattaa atatacaaac
6661 cgaccattca tggcacaggt aggcctcaaa tgggcccata aataggccta ccatgagata
6721 taatcaggcc ttacatgggc catcggttgg ataagcgggg cctaaatgga ccaaaccatg
6781 gattctcggg gcgtaaatgc agcatccaaa attgggcggt gaaggtaccg tgttctctct
6841 ccctgttctt ttaagggttg aaccgtgtta taactcacag aaggaaaaat atcacgaaat
6901 atttcgtcct catgttatgt cacaaattc
//